Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)

Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.

Genome assembly annotation of Lactiplantibacillus plantarum from Illumina NGS data using Prokka v1.15.6 following de novo assembly with SPAdes.

Prokka批量执行脚本 Batch Prokka can help you execute prokka batch assemblies.

Plasmidome analysis to track the transfer route of AMR genes in bacteria

A script for downloading complete sequences from genbank and make blast database for use with prokka

End-to-end automated bioinformatics pipeline for bacterial genome assembly and functional annotation (SRR35523993).

🦇🧫📊Study on bat gut shotgun metagenomics

Bio-Gen: An automated, containerized pipeline for bacterial genome assembly and annotation. Built on Ubuntu 24.04, it integrates fastp, SPAdes, Pilon, and Prokka to transform raw reads into polished GenBank files and MultiQC reports with a single command.

[a.a. 23/24] M. Gambardella

Graph-based pangenomic and synteny analysis of Helicobacter pylori (n=41 complete RefSeq genomes) using PPanGGOLiN, with reproducible workflows for annotation (Prokka), ANI quality control (FastANI), core-genome phylogeny (MAFFT + IQ-TREE 2), resistome profiling (AMRFinderPlus), and publication-grade visualizations.

Projeto elaborado para WBDS LA CAMP- Anotação do genoma da bactéria Clostridium botulinum com pyrodigal e prokka

A tool to take annotation files from bakta or prokka and produce a human readable report.

Minimal pixi proof-of-concept for biologists — Prokka, Bakta and Snakemake in four isolated environments

This project is part of the course of Computational Microbial Genomics, held by Nicola Segata (A.Y. 2021-2022) @ University of Trento.

XSLT file to transform a UniProt proteome XML file to a protein fasta file for Prokka

Reusable bacterial genome analysis pipeline for paired-end FASTQ data using FastQC, fastp, SPAdes, QUAST, Prokka, and MultiQC.