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Frederick-abichahine / Dental-Plaque-Metagenomic-Analysis

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Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.

shell bash bioinformatics microbial-genomics metagenomic-analysis phylogenetic-analysis roary prokka genomic-analysis checkm oral-microbiome metadata-integration dental-plaque peri-implantitis sgb-mags phylophlan fast-tree
  • Updated Jul 13, 2025
  • Jupyter Notebook

hafeezakinniyi / bacterial-isolate-wgs-pipeline

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A modular, reproducible, and automated Bash pipeline for bacterial isolate whole-genome sequencing analysis from Illumina paired-end reads, including quality control, taxonomic classification, genome assembly, genome characterization, and coverage estimation.

linux bash bioinformatics genomics amr microbiology mlst wgs spades samtools whole-genome-sequencing bowtie2 antimicrobial-resistance quast kraken2 bracken abricate checkm bacterial-genomics amrfinderplus
  • Updated Jul 21, 2026
  • Shell

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