🧬 gget enables efficient querying of genomic reference databases
Efficient querying of biological databases
rbioapi: User-Friendly R Interface to Biologic Web Services' API
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
Working Demo on GO Enrichment Analysis using topGO, clusterProfiler and Enrichr/enrichR. Visit repo website for HTML output
Integrated Differential Expression and Annotation
A python script for batch querying Enrichr, a gene enrichment database
Extract, cluster and analyse gene expression patterns using GTEx data and STRING-db and Enrichr APIs
Interactive enrichment network analysis tool with diffusion-based prioritization, pathway projection, and publication-ready visualization.
Convert your STDeconvolve-generated and EnrichR-decoded topics into Seurat spatial clustering information via AUCell
A repository of RNA-seq & microarray pipelines, network modeling, and ML-based biomarker validation projects from my 2nd–3rd year undergrad.
Enrich a leads CSV with firmographics, tech stack, and contact validation from pluggable providers, caching results to avoid duplicate API spend.
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