Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
-
Updated
Dec 16, 2025 - Python
#
alphafold2
Here are 115 public repositories matching this topic...
User friendly and accurate binder design pipeline
-
Updated
Aug 12, 2026 - Python
🧬 gget enables efficient querying of genomic reference databases
rna-seq genomics reference databases ensembl proteomics blast transcriptomics uniprot ncbi enrichment-analysis enrichr cellxgene alphafold gget archs4 alphafold2
-
Updated
Aug 17, 2026 - Python
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
protein-structure protein representation-learning protein-sequence predicted-structures pretraining structure-aware protein-language-model alphafold2 foldseek structural-alphbet protein-llm
-
Updated
Mar 8, 2026 - Python
Optimizing AlphaFold Training and Inference on GPU Clusters
-
Updated
Jul 16, 2024 - Python
Trainable PyTorch framework for developing protein, RNA and complex models.
-
Updated
Nov 13, 2024 - Python
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
bioinformatics deep-learning protein-protein-interaction protein-structure-prediction protein-protein-docking protein-complexes alphafold2
-
Updated
Sep 8, 2024 - Python
Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures
-
Updated
Feb 25, 2024 - Python
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
bioinformatics structural-biology pymol-plugin protein-structure computational-biology pymol alphafold alphafold2
-
Updated
Jul 23, 2024 - Python
MMseqs2 app to run on your workstation or servers
electron docker golang bioinformatics vue docker-compose profile-search sequence-search mmseqs alphafold2 colabfold foldseek structure-search
-
Updated
Aug 20, 2026 - Vue
Protein 3D structure prediction pipeline
workflow pipeline nextflow protein-structure protein-sequences protein-folding protein-fold-prediction nf-core alphafold2 colabfold esmfold
-
Updated
Aug 13, 2026 - HTML
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
-
Updated
Sep 28, 2024 - Python
A curated list of awesome self-learning materials in Computational Structural Biology, such as sources, tutorials, etc.
awesome bioinformatics deep-neural-networks deep-learning computational-biology awesome-list alphafold2
-
Updated
Sep 6, 2022
Modelling protein conformational landscape with Alphafold
-
Updated
Aug 29, 2025 - Jupyter Notebook
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
protein-structure generative-model tcr inpainting protein-folding diffusion-models alphafold2 loop-design
-
Updated
Apr 13, 2026 - Jupyter Notebook
[𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction
deep-learning computational-biology prediction immunology infectious-diseases multimodal-learning multimodal multimodal-deep-learning self-supervised-learning immunogenicity alphafold contrastive-learning nature-machine-intelligence immunogenicity-prediction cancer-immunology alphafold2 ai4science ai-for-science multimodal-ai ai-for-biology
-
Updated
Mar 5, 2026 - Python
Run AlphaFold2 (and multimer) step by step
-
Updated
Apr 23, 2022 - Python
Cryptic pocket prediction using AlphaFold 2
-
Updated
Nov 27, 2022 - Jupyter Notebook
Improve this page
Add a description, image, and links to the alphafold2 topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the alphafold2 topic, visit your repo's landing page and select "manage topics."