solo: CellRanger .h5 matrices, written without libhdf5 (answers #177, stacked on #179) - #180

Closed

BenjaminDEMAILLE wants to merge 10 commits into

scverse:mainfrom

BenjaminDEMAILLE:bd/solo-cellranger-h5

Commits on Jul 31, 2026

fix(solo): MultiGeneUMI_CR gives a tied UMI to nobody, not to everybody

BenjaminDEMAILLE
and
claude
committed
docs(changelog): record the MultiGeneUMI_CR tie fix

BenjaminDEMAILLE
and
claude
committed
feat(solo): --soloOutRawBarcodes Observed, for a CellRanger-shaped raw matrix

BenjaminDEMAILLE
and
claude
committed
fix(solo): MultiGeneUMI_CR decides ownership on corrected UMIs

BenjaminDEMAILLE
and
claude
committed
feat(solo): CellRanger behaviour by default on 10x geometry

BenjaminDEMAILLE
and
claude
committed
docs(divergence): correct the CellRanger gap figure in 1.3

BenjaminDEMAILLE
and
claude
committed
feat(solo): --soloOutLayout CellRanger, CellRanger's output shape

BenjaminDEMAILLE
and
claude
committed
feat(solo): metrics_summary.csv under the CellRanger layout

BenjaminDEMAILLE
and
claude
committed
feat(solo): CellRanger .h5 matrices, written without libhdf5

BenjaminDEMAILLE
and
claude
committed
feat(hdf5): deflate the dataset chunks

BenjaminDEMAILLE
and
claude
committed