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Pull requests: scverse/rustar-aligner

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Pull requests list

chore(deps): bump anyhow from 1.0.103 to 1.0.104 dependencies Pull requests/issues that update a dependency file rust Pull requests that update rust code
#194 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump docker/metadata-action from 6.1.0 to 6.2.0 dependencies Pull requests/issues that update a dependency file github_actions Pull requests that update GitHub Actions code
#193 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump thiserror from 2.0.18 to 2.0.19 dependencies Pull requests/issues that update a dependency file rust Pull requests that update rust code
#192 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump actions/checkout from 7.0.0 to 7.0.1 dependencies Pull requests/issues that update a dependency file github_actions Pull requests that update GitHub Actions code
#191 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump rustc-hash from 2.1.2 to 2.1.3 dependencies Pull requests/issues that update a dependency file rust Pull requests that update rust code
#190 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump docker/login-action from 4.5.1 to 4.5.2 dependencies Pull requests/issues that update a dependency file github_actions Pull requests that update GitHub Actions code
#189 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump bitflags from 2.12.1 to 2.13.1 dependencies Pull requests/issues that update a dependency file rust Pull requests that update rust code
#188 opened Jul 31, 2026 by dependabot Bot Loading…
chore(deps): bump actions/setup-node from 6 to 7 dependencies Pull requests/issues that update a dependency file github_actions Pull requests that update GitHub Actions code
#187 opened Jul 31, 2026 by dependabot Bot Loading…
perf(seed): batched prefetching MMP search — measured at 0.5%, not recommended
#186 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
perf(align): reuse cluster_seeds' window-bin map across reads (-7% median, output-neutral)
#185 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
1
solo: count intronic reads by default on 10x (closes 30 of the 32 points vs CellRanger, stacked on #182)
#184 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
1
solo: --soloCellFilter OrdMag, CellRanger's cell call (first item of #181, stacked on #180)
#182 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
1
solo: metrics_summary.csv under the CellRanger layout (stacked on #178)
#179 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
1
solo: --soloOutLayout CellRanger, CellRanger's output shape (changes output paths on 10x, stacked on #176)
#178 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
3
feat(solo): CellRanger behaviour by default on 10x geometry (changes default output, stacked on #175)
#176 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
3
fix(solo): MultiGeneUMI_CR decides ownership on corrected UMIs (stacked on #174)
#175 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
2
feat(solo): --soloOutRawBarcodes Observed — a CellRanger-shaped raw matrix (stacked on #173)
#174 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
2
fix(solo): MultiGeneUMI_CR was inert — a tied UMI goes to nobody, not everybody
#173 opened Jul 31, 2026 by BenjaminDEMAILLE Contributor Loading…
1
test: A/B bench harness that drops rounds it could not measure honestly
#171 opened Jul 30, 2026 by BenjaminDEMAILLE Contributor Loading…
refactor: drop Transcript::read_seq, a public field nothing reads
#170 opened Jul 30, 2026 by BenjaminDEMAILLE Contributor Loading…
fix(test): the unmapped-reason test re-implemented the logic it was testing
#169 opened Jul 30, 2026 by BenjaminDEMAILLE Contributor Loading…
perf(score): slide the splice-motif window across the junction scan (output-neutral)
#167 opened Jul 30, 2026 by BenjaminDEMAILLE Contributor Loading…
fix: --runThreadN 1 ran on every core, not on one
#166 opened Jul 30, 2026 by BenjaminDEMAILLE Contributor Loading…
solo: cbMinP posterior threshold, oneExact guard, adapter-anchored geometry (replaces #150)
#165 opened Jul 30, 2026 by BenjaminDEMAILLE Contributor Loading…
1
genome: --genomeType SuperTranscriptome
#161 opened Jul 29, 2026 by BenjaminDEMAILLE Contributor Loading…
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