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Pull requests: Bioconductor/VariantAnnotation
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fix: preserve '*' spanning deletion alleles at read time (#65)
#104
opened Jul 1, 2026 by
jmg421
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fix: strand-aware PRECEDEID/FOLLOWID for intergenic variants (#55)
#102
opened Jul 1, 2026 by
jmg421
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fix: writeVcf preserves fileDate and suppresses bare contig lines (#78)
#101
opened Jul 1, 2026 by
jmg421
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fix: expand() handles NULL geno data in sites-only VCFs (#72)
#100
opened Jul 1, 2026 by
jmg421
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fix: expand() converts Number=A to Number=1 in headers (#79)
#99
opened Jul 1, 2026 by
jmg421
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fix: locateVariants no longer silently drops intronic variants (#87)
#98
opened Jul 1, 2026 by
jmg421
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fix: predictCoding uses CDS-mapped width for exon/intron boundary deletions (#83)
#97
opened Jun 30, 2026 by
jmg421
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fix: DBS across codon boundary correctly classified as nonsense (#84)
#96
opened Jun 30, 2026 by
jmg421
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fix: expand() preserves non-standard rowRanges columns (#85)
#95
opened Jun 30, 2026 by
jmg421
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fix: locateVariants/predictCoding no longer silently drop large INDELs (#81)
#94
opened Jun 30, 2026 by
jmg421
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fix: quote-aware VCF header parser preserves '=' in Description values (#80, #89)
#93
opened Jun 15, 2026 by
jmg421
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2
fix: predictCoding on empty ranges returns AAStringSet for REFAA/VARAA (#86)
#92
opened Jun 12, 2026 by
jmg421
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