Search results

possible problem parsing INFO description field

Status: Open.

#89 In Bioconductor/VariantAnnotation;

· vjcitn opened on May 22, 2025

ensemblVEP::parseCSQToGRanges

Status: Open.

#88 In Bioconductor/VariantAnnotation;

· peterjuv opened on Mar 7, 2025

locateVariants failing on intronic variants

Status: Open.

#87 In Bioconductor/VariantAnnotation;

· jayoung opened on Aug 9, 2024

predictCoding on empty ranges drops REFAA/VARAA, should be empty AAStringSet instead?

Status: Open.

#86 In Bioconductor/VariantAnnotation;

· mschubert opened on Aug 6, 2024

expand() and non-standard rowRanges columns

Status: Open.

#85 In Bioconductor/VariantAnnotation;

· jayoung opened on Jul 19, 2024

nonsense mutations from DBS across two codons misclassified as nonsynonymous?

Status: Open.

#84 In Bioconductor/VariantAnnotation;

· ChristofferFlensburg opened on Jul 11, 2024

Incorrect annotation of exon/intron boundary deletion

Status: Open.

#83 In Bioconductor/VariantAnnotation;

· mschubert opened on Jul 3, 2024

readVcf does not recognize my vcf file?

Status: Open.

#82 In Bioconductor/VariantAnnotation;

· igrabski opened on May 15, 2024

locateVariants() and predictCoding() silently drop large INDELs

Status: Open.

#81 In Bioconductor/VariantAnnotation;

· johnstonmj opened on Apr 25, 2024

readVcf doesn't handle quoted = in hapmap_exome_chr22.vcf.gz correctly

Status: Open.

#80 In Bioconductor/VariantAnnotation;

· LTLA opened on Jan 2, 2024

Convert Number=A to Number=1 when creating an ExpandedVCF

Status: Open.

#79 In Bioconductor/VariantAnnotation;

· LTLA opened on Jan 2, 2024

Faithfully recapitulate metadata via a round-trip through writeVcf + readVcf.

Status: Open.

#78 In Bioconductor/VariantAnnotation;

· LTLA opened on Jan 2, 2024