TimeSeries

Data and methods for Chapter Four of my dissertation, a stort-term heat stress physiology & high-resolution gene expression time series performed on Porites compressa, Montipora capitata, and Pocillopora acuta in the experimental tank system at CBLS in Summer 2025.

Protocols

• Sampling protocol for each timepoint
• Example sampling schedule
• Bulk RNA extraction protocol

Google Drive Links:

Important Google Sheets:

• Bulk RNA - Finalized after RNA submission Oct 2025
• All Sample Status + Location - (github version here)

Images of all lab notebook pages and datasheets:

• Notebook 66

Full-size images for color score measurements:

• Raw Color Score images: .jpeg, .tiff, and .CR2
  • All jpegs are also on this repo in /1-Pcom/data/Images (and etc for each species)
  • Image --> Plug/Fragment metadata are in 1-Pcom/data/Images/ColorScore.csv (and etc for each species)

Quick summary of currently available data

Species	Porites compressa	Montipora capitata	Pocillopora acuta
Species
Temperature
Fv/Fm trajectories