Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations

A Forth JIT & AOT compiler designed for self-assembling and self-bootstrapping.

This code allows users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

AI models for prediction and design of novel self-assembling peptides

This code trains and implements a stochastic physics-informed neural ordinary differential equation (SPINODE) framework on a directed colloidal self-assembly test case.

Developed and simulated a randomly scattered collective of robots with sensors to self-assemble into any given connected shape, using gradient information derived from the desired shape.

This repository contains the software used in the papers "Self-Replicating Machines in Continuous Space with Virtual Physics" and "Self-Replication and Self-Assembly for Manufacturing" (see self-replicating-machines.pdf and self-replication-and-self-assembly.pdf).

Model self assembly of particles using Inverse Gaussian Noise

Open-source desktop nanofactory + honest synthesizer thesis: an AI compiler turns a shape into an orderable DNA-origami recipe (scaffold + optimized staples + wet-lab protocol + 3D oxDNA), behind one request router over water/drink/print/molecular makers. Citation-gated, buildable from <$1500 of parts; reproducible physics research.

Material for the 'Trieste Next' popular science festival. SISSA group 2023/2024.

This code trains and implements a characterization framework based on deep learning for characterizing structural states of colloidal self-assembly systems.

This repository contains the post-processed data and MATLAB scripts used to reproduce all figures presented in the manuscript and Supplementary Information (SI) of: "Nonequilibrium Self-Assembly Control by the Stochastic Landscape Method". Authors: Michael Faran and Prof. Gili Bisker.

Simulation software for patchy particles in 2d

Python library and Julia scripts to simulate several Flexible Chain Walker (FCW) models.

Decentralized swarm self-assembly: identical units build & self-heal a staircase from one neighbour-only local rule. Kilobot-style gradient assembly, tested.

Simulation of 2D self-assembly driven by depletion force

Square Lattice Assembly Model

Binary subsite extension to the polyomino self-assembly model

Ranking seven real programmable-matter technologies (DNA nanotech, modular robots, acoustic assembly, and more) against the 'utility fog' dream — and the L² scaling law that explains why none has closed the gap. Article, figures, scripts, and scored research.