entity-trajectory

Differentiable, Hardware Accelerated, Molecular Dynamics

WebGL protein viewer

A pocket volume analyzer for use in protein modeling.

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

🏗️ Statistical models for biomolecular dynamics 🏗️

MD pharmacophores and virtual screening

Solvation Structure and Thermodynamic Mapping

PyRod - Tracing water molecules in molecular dynamics simulations

End-To-End Molecular Dynamics (MD) Engine using PyTorch

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Public development project of the LAMMPS MD software package

Detect and characterize binding pockets from molecular simulations.

An open library for the analysis of molecular dynamics trajectories

MDAnalysis is a Python library to analyze molecular dynamics simulations.

🚂 Python API for Emma's Markov Model Algorithms 🚂

A comprehensive macromolecular library

Fast and All atom Protein-Ligand Interaction Profiler

Dynamic pharmacophore modeling of molecular interactions

Powerful, efficient particle trajectory analysis in scientific Python.

Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation