OpenOmics / chrom-seek Star 5 Code Issues Pull requests An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq quality-control annotation chip-seq atac-seq bulk cell-free-dna peak-calling differential-accessibility differential-binding Updated Jun 17, 2026 Python
marshall-lab / damidBind Star 2 Code Issues Pull requests An R/Bioconductor package for DamID differential binding, gene transcription and chromatin accessibility analysis. transcription-factors gene-expression transcription differential-expression-analysis damid differential-binding targeted-damid catada Updated Jun 23, 2026 R
gynecoloji / snakemake_ATACseq_spikein Star 2 Code Issues Pull requests Reproducible Snakemake workflow for spike-in–normalized ATAC-seq — concatenated-genome alignment, MACS2 peaks, a consensus fragment-count matrix, an interactive QC report, and DESeq2 differential binding. Docker/Apptainer-ready. docker bioinformatics snakemake reproducible-research deseq2 atac-seq epigenomics atacseq peak-calling deeptools apptainer differential-binding spike-in-normalization Updated Jul 14, 2026 Python