Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

A Deep Learning Python Toolkit for Healthcare Applications.

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.

Create "Table 1" for research papers in Python

📰 High-performance tool for negation and uncertainty detection in radiology reports

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

Claude Code skills for medical research — literature search, reporting guidelines, statistical analysis, publication figures. Built by a physician-researcher, tested on real publications. MIT licensed.

A Slicer extension to provide a GUI around pyradiomics

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

AI-assisted, end-to-end meta-analysis pipeline with reproducible tooling.

A toolkit for evaluating and monitoring AI models in clinical settings

Toolbox for biostatistics and clinical data analysis in R. Developed by the biostatistics team at Laboratorios Sophia S.A. de C.V.

🦠🧬🧑‍💻📇 Microbial genomes-to-report pipeline

Phoenix CTMS - the ultimative CTMS/PRS/CDMS.

Aggregate and analyse clinical trials data from public registers

this master thesis project is based on OpenAI Whisper with the goal to transcibe interviews

Dataset for Coherent Topic Segmentation and Classification

Give your AI agents clinical database access, research automation, and clinician-reviewed domain knowledge for MIMIC-IV, eICU, and more.

A framework for multisite longitudinal clinical trials built on Django