first check of just removing redundant spaces#175
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redundant spaces are removed from the file
* refactor: gracefully handle missing residues in base pair conversion * build: bump org.immutables:value from 2.12.1 to 2.12.2 (#176) Bumps [org.immutables:value](https://github.com/immutables/immutables) from 2.12.1 to 2.12.2. - [Release notes](https://github.com/immutables/immutables/releases) - [Commits](immutables/immutables@2.12.1...2.12.2) --- updated-dependencies: - dependency-name: org.immutables:value dependency-version: 2.12.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * fix: restart nucleotide numbering per strand in VARNA-TZ visualization * fix: remove onlyDotsMinuses guard from non-canonical drawing fallback * fix: send explicit strandBreaks to VARNA-TZ for strand boundary display The VARNA-TZ service detects strand breaks only via a numbering discontinuity heuristic in SVG post-processing. For 3D input the real PDB residue numbers are often continuous across chains (e.g. 2KBP chain A 1-12, chain B 13-24), so no break was drawn. Add an explicit strandBreaks field (0-based last index of each strand except the final) to StructureData and compute it from combinedStrand.strands() for both 2D and 3D paths. The service honors this in addition to the heuristic. --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: Tomasz Zok <tomasz.zok@gmail.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Closed in favor of #179 |
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redundant spaces are removed from the file