chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

[edx-requirements-bot]

List of packages in the PR without any issue.

• boto3 changes from 1.43.46 to 1.43.51
• botocore changes from 1.43.46 to 1.43.51
• chdb changes from 4.2.0 to 4.2.1
• clickhouse-connect[async] changes from 1.4.2 to 1.5.0
• coverage[toml] changes from 7.15.1 to 7.15.2
• filelock changes from 3.29.7 to 3.31.0
• jaraco-functools changes from 4.5.0 to 4.6.0
• mypy changes from 2.2.0 to 2.3.0
• pip-tools changes from 7.5.3 to 7.6.0
• platformdirs changes from 4.10.0 to 4.10.1
• pydata-sphinx-theme changes from 0.16.1 to 0.20.0
• smart-open[s3] changes from 8.0.0 to 8.0.1
• soupsieve changes from 2.8.4 to 2.9
• sphinx-book-theme changes from 1.2.0 to 1.4.0
• tomlkit changes from 0.15.0 to 0.15.1
• tox changes from 4.56.4 to 4.57.0
• urwid changes from 4.0.3 to 4.0.4

[edx-requirements-bot]

These Packages need manual review..

• [DOWNGRADE] build changes from 1.5.1 to 1.5.0