-
Notifications
You must be signed in to change notification settings - Fork 13
All issues
Issue creation is restricted in this repository
Issues
is:issue state:open
is:issue state:open
Search results
Add the fungtion module for fungal effectors prediction
enhancementNew feature or requestNew feature or requestStatus: Open.#104 In nf-core/proteinannotator;Add the caalm module for cazyme annotation
enhancementNew feature or requestNew feature or requestStatus: Open.#94 In nf-core/proteinannotator;Add TM-Vec and DeepBLAST from "Protein remote homology detection and structural alignment using deep learning"
enhancementNew feature or requestNew feature or requestStatus: Open.#38 In nf-core/proteinannotator;Add mTM-Align
enhancementNew feature or requestNew feature or requestnf-core moduleExisting nf-core moduleExisting nf-core moduleStatus: Open.#37 In nf-core/proteinannotator;Add S2F (Sequence to Function) from "Protein function prediction for newly sequenced organisms"
enhancementNew feature or requestNew feature or requestStatus: Open.#36 In nf-core/proteinannotator;Add REBEAN (Read Embedding Based Enzyme Annotator) from "Deciphering enzymatic potential in metagenomic reads through DNA language model"
enhancementNew feature or requestNew feature or requestStatus: Open.#35 In nf-core/proteinannotator;Add ProtTucker from "Contrastive learning on protein embeddings enlightens midnight zone"
enhancementNew feature or requestNew feature or requestStatus: Open.#33 In nf-core/proteinannotator;Add PLMsearch from "PLMSearch: Protein language model powers accurate and fast sequence search for remote homology"
enhancementNew feature or requestNew feature or requestStatus: Open.#32 In nf-core/proteinannotator;Add MMseqs
enhancementNew feature or requestNew feature or requestnf-core moduleExisting nf-core moduleExisting nf-core moduleStatus: Open.#31 In nf-core/proteinannotator;Add dense homolog retriever (DHR) from "Fast, sensitive detection of protein homologs using deep dense retrieval"
enhancementNew feature or requestNew feature or requestStatus: Open.#29 In nf-core/proteinannotator;Add CLEAN (contrastive learning-enabled enzyme annotation) from "Functional protein mining with conformal guarantees"
enhancementNew feature or requestNew feature or requestStatus: Open.#28 In nf-core/proteinannotator;Add BLAST/BLASTP
enhancementNew feature or requestNew feature or requestnf-core moduleExisting nf-core moduleExisting nf-core moduleStatus: Open.#27 In nf-core/proteinannotator;