Elkins Lab
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- United States of America
- https://github.com/elkins-lab
- george.f.elkins@gmail.com
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synth-cryo-em
synth-cryo-em PublicGenerate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
Python 2
Repositories
- torsion-tuner Public
GNN-based protein structure refinement using JAX-differentiable kinematics to fit solution-state experimental data (SAXS/NMR).
elkins-lab/torsion-tuner’s past year of commit activity - diff-biophys Public
Differentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
elkins-lab/diff-biophys’s past year of commit activity - synth-pdb Public
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
elkins-lab/synth-pdb’s past year of commit activity - synth-saxs Public
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
elkins-lab/synth-saxs’s past year of commit activity - bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
elkins-lab/bioconda-recipes’s past year of commit activity - diff-ensemble Public
Differentiable VAE framework for predicting protein structural ensembles (IDPs) consistent with SAXS and NMR data. Built on JAX/Flax.
elkins-lab/diff-ensemble’s past year of commit activity - synth-cryo-em Public
Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
elkins-lab/synth-cryo-em’s past year of commit activity - synth-afm Public
Differentiable High-Speed AFM (HS-AFM) simulation for protein structures. JAX-powered toolkit for generating synthetic movies with realistic tip-dilation and scanning lag.
elkins-lab/synth-afm’s past year of commit activity
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