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Bump com.fasterxml.jackson.core:jackson-databind from 2.12.7.1 to 2.22.0 in /wdl-parsing/WDLParsingFunction #189

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Merged
denis-yuen merged 2 commits into from
Jul 15, 2026
Merged

Bump com.fasterxml.jackson.core:jackson-databind from 2.12.7.1 to 2.22.0 in /wdl-parsing/WDLParsingFunction #189

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78ebadc
Bump com.fasterxml.jackson.core:jackson-databind
dependabot[bot] Jun 30, 2026
4d3486a
use bom correctly and bump dependency checker plugin
denis-yuen Jul 9, 2026
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16 changes: 8 additions & 8 deletions wdl-parsing/WDLParsingFunction/THIRD-PARTY-LICENSES.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -101,19 +101,19 @@ Lists of 191 third-party dependencies.
(The Apache Software License, Version 2.0) J2ObjC Annotations (com.google.j2objc:j2objc-annotations:1.3 - https://github.com/google/j2objc/)
(The Apache Software License, Version 2.0) Jackson 2 extensions to the Google APIs Client Library for Java (com.google.api-client:google-api-client-jackson2:1.33.2 - https://github.com/googleapis/google-api-java-client/google-api-client-jackson2)
(The Apache Software License, Version 2.0) Jackson 2 extensions to the Google HTTP Client Library for Java. (com.google.http-client:google-http-client-jackson2:1.41.4 - https://github.com/googleapis/google-http-java-client/google-http-client-jackson2)
(The Apache Software License, Version 2.0) Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.12.3 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310)
(The Apache Software License, Version 2.0) Jackson module: JAXB Annotations (com.fasterxml.jackson.module:jackson-module-jaxb-annotations:2.12.2 - https://github.com/FasterXML/jackson-modules-base)
(The Apache Software License, Version 2.0) Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.12.3 - http://github.com/FasterXML/jackson)
(The Apache Software License, Version 2.0) Jackson-core (com.fasterxml.jackson.core:jackson-core:2.12.7 - https://github.com/FasterXML/jackson-core)
(The Apache Software License, Version 2.0) jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.12.7.1 - http://github.com/FasterXML/jackson)
(The Apache Software License, Version 2.0) Jackson datatype: JSR310 (com.fasterxml.jackson.datatype:jackson-datatype-jsr310:2.22.0 - https://github.com/FasterXML/jackson-modules-java8/jackson-datatype-jsr310)
(The Apache Software License, Version 2.0) Jackson module: Old JAXB Annotations (javax.xml.bind) (com.fasterxml.jackson.module:jackson-module-jaxb-annotations:2.22.0 - https://github.com/FasterXML/jackson-modules-base)
(The Apache Software License, Version 2.0) Jackson-annotations (com.fasterxml.jackson.core:jackson-annotations:2.22 - https://github.com/FasterXML/jackson)
(The Apache Software License, Version 2.0) Jackson-core (com.fasterxml.jackson.core:jackson-core:2.22.0 - https://github.com/FasterXML/jackson-core)
(The Apache Software License, Version 2.0) jackson-databind (com.fasterxml.jackson.core:jackson-databind:2.22.0 - https://github.com/FasterXML/jackson)
(EDL 1.0) Jakarta Activation API jar (jakarta.activation:jakarta.activation-api:1.2.2 - https://github.com/eclipse-ee4j/jaf/jakarta.activation-api)
(EPL 2.0) (GPL2 w/ CPE) Jakarta Annotations API (jakarta.annotation:jakarta.annotation-api:1.3.5 - https://projects.eclipse.org/projects/ee4j.ca)
(EPL 2.0) (GPL2 w/ CPE) jakarta.ws.rs-api (jakarta.ws.rs:jakarta.ws.rs-api:2.1.6 - https://github.com/eclipse-ee4j/jaxrs-api)
(Eclipse Distribution License - v 1.0) jakarta.xml.bind-api (jakarta.xml.bind:jakarta.xml.bind-api:2.3.2 - https://github.com/eclipse-ee4j/jaxb-api/jakarta.xml.bind-api)
(BSD-3-Clause) janino (org.codehaus.janino:janino:3.1.7 - http://janino-compiler.github.io/janino/)
(The Apache Software License, Version 2.0) Java 6 (and higher) Extensions to the Google API Client Library for Java. (com.google.api-client:google-api-client-java6:1.33.2 - https://github.com/googleapis/google-api-java-client/google-api-client-java6)
(The Apache Software License, Version 2.0) Java 6 (and higher) extensions to the Google OAuth Client Library for Java. (com.google.oauth-client:google-oauth-client-java6:1.33.0 - https://github.com/googleapis/google-oauth-java-client/google-oauth-client-java6)
(CDDL 1.1) (GPL2 w/ CPE) Java Architecture for XML Binding (javax.xml.bind:jaxb-api:2.2.12 - http://jaxb.java.net/)
(Apache-2.0) (LGPL-2.1-or-later) Java Native Access (net.java.dev.jna:jna:5.9.0 - https://github.com/java-native-access/jna)
(EDL 1.0) JavaBeans Activation Framework API jar (jakarta.activation:jakarta.activation-api:1.2.1 - https://github.com/eclipse-ee4j/jaf/jakarta.activation-api)
(Apache 2) JavaEWAH (com.googlecode.javaewah:JavaEWAH:1.1.13 - https://github.com/lemire/javaewah)
(EPL 2.0) (GPL2 w/ CPE) javax.inject:1 as OSGi bundle (org.glassfish.hk2.external:jakarta.inject:2.6.1 - https://github.com/eclipse-ee4j/glassfish-hk2/external/jakarta.inject)
(Apache License, Version 2.0) JCL 1.2 implemented over SLF4J (org.slf4j:jcl-over-slf4j:1.7.32 - http://www.slf4j.org)
Expand Down Expand Up @@ -190,4 +190,4 @@ Lists of 191 third-party dependencies.
(WDL License https://github.com/openwdl/wdl/blob/master/LICENSE) wdl-biscayne (org.broadinstitute:wdl-biscayne_2.13:85 - no url defined)
(WDL License https://github.com/openwdl/wdl/blob/master/LICENSE) wdl-draft2 (org.broadinstitute:wdl-draft2_2.13:85 - no url defined)
(WDL License https://github.com/openwdl/wdl/blob/master/LICENSE) wdl-draft3 (org.broadinstitute:wdl-draft3_2.13:85 - no url defined)
(Unknown license) womtool (org.broadinstitute:womtool_2.13:85 - no url defined)
(Cromwell License https://github.com/broadinstitute/cromwell/blob/develop/LICENSE.txt) womtool (org.broadinstitute:womtool_2.13:85 - no url defined)
21 changes: 13 additions & 8 deletions wdl-parsing/WDLParsingFunction/pom.xml
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Expand Up @@ -7,10 +7,8 @@
<packaging>jar</packaging>
<name>WDL parser created for SAM CLI.</name>
<properties>
<maven.compiler.source>11</maven.compiler.source>

@denis-yuen denis-yuen Jul 9, 2026

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These are obsolete in favour of the release property
https://maven.apache.org/plugins/maven-compiler-plugin/examples/set-compiler-source-and-target.html

<maven.compiler.target>11</maven.compiler.target>
<jersey-version>2.34</jersey-version>
<jackson-version>2.12.3</jackson-version>
<jackson-version>2.22.0</jackson-version>
<junit-version>5.7.2</junit-version>
<maven-plugin-version>3.0.0-M5</maven-plugin-version>
</properties>
Expand Down Expand Up @@ -48,6 +46,17 @@
<url>https://artifacts.oicr.on.ca/artifactory/collab-release</url>
</repository>
</repositories>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>com.fasterxml.jackson</groupId>
<artifactId>jackson-bom</artifactId>
<version>${jackson-version}</version>

@denis-yuen denis-yuen Jul 9, 2026

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The bom enforces the proper version of the annotations

<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<dependency>
<groupId>com.amazonaws</groupId>
Expand Down Expand Up @@ -132,13 +141,10 @@
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<!-- The "jackson-version" version of this artifact doesn't exist, override for dependabot -->
<version>2.12.7.1</version>
</dependency>
<dependency>
<groupId>org.openapitools</groupId>
Expand All @@ -148,7 +154,6 @@
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-jsr310</artifactId>
<version>${jackson-version}</version>
</dependency>
<dependency>
<groupId>org.glassfish.jersey.core</groupId>
Expand Down Expand Up @@ -211,7 +216,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.1.2</version>
<version>3.11.0</version>
<configuration>
<failOnWarning>true</failOnWarning>
<outputXML>true</outputXML>
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