Implement qpx as output for both TMT and LFQ

[ypriverol]

We want to remove the mzTab output from proteomicsLFQ and ProteinQuantifier in favor of qpx. These are the steps:

• Test the current qpx implementation for both pipelines in OpenMS.
• Refine qpx to convert from OpenMS + quantms (TMT & proteomicsLFQ) -> qpx
• Check that all the PSMs features, metadata , versions, and proteins are released.
• Release OpenMS binary version
• Perform a PR.

This feature is a precondition for releasing the next version of quantms.

[Yixuan39]

Hello @ypriverol and @daichengxin ,

I noticed that quantms-diann already supports both qpx and MuData output formats. Since this issue is about moving quantms toward qpx, I was wondering whether MuData support is also planned for quantms in the future, or whether qpx will be the preferred output format going forward.

Thanks!