CLI interface for pyteomics.biolccc for estimating retention time of peptides. Only supports python2.7 due to biolccc requirement.

Usage: biolccc-cli [OPTIONS] COMMAND [ARGS]...

Options:
  --help  Show this message and exit.

Commands:
  chemgroups
  run         See biolccc documentation

Usage: biolccc-cli run [OPTIONS] [PEPTIDE]...

  See biolccc documentation

Options:
  --column-length FLOAT       the column length in mm  [default: 100.0]
  --diameter FLOAT            the internal column diameter in mm  [default:
                              0.1]
  --pore-size FLOAT           average pore size in Angstroms  [default: 300.0]
  --concA FLOAT               Concentration (%) of the eluting solvent (ACN
                              for reverse phase) of component A  [default:
                              5.0]
  --concB INTEGER             Concentration (%) of the eluting solvent (ACN
                              for reverse phase) of component B  [default: 95]
  --flow-rate FLOAT           flow rate in mL/min  [default: 0.0005]
  --gradientStart FLOAT       Gradient start percent B  [default: 0.0]
  --gradientStop FLOAT        Gradient stop percent B  [default: 90.0]
  --gradientLength FLOAT      Gradient length in minutes  [default: 60.0]
  --input-type [string|file]  Whether or not the input is a string of peptides
                              or files of peptides  [default: string]
  --help                      Show this message and exit.