CI: R parse check and secret scan - #176
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model training - Add all caret job queue label keys
Longitudinal ml
Fix docker modal blank screen
Add async caret job queue with concurrent
.github/workflows/ci.yml runs on push to main and on PRs: - r-parse: Rscript scripts/check_parse.R syntax-checks every .R file (parse only, no packages needed), catching breakage that would otherwise only appear when the Shiny app launches. All 105 current files parse. - secrets: gitleaks history scan, advisory for now (continue-on-error). Known secret-hygiene items — the hardcoded dev cookie password and the committed dev users.sqlite — are being addressed separately; flip this to blocking once they are cleared. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This was referenced Jul 14, 2026
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What
Adds
.github/workflows/ci.ymlto the app repo:Rscript scripts/check_parse.Rsyntax-checks every.Rfile (parse only — no packages). Catches breakage that otherwise only shows when the app launches.gitleakshistory scan — advisory for now (continue-on-error).Locally, all 105 R files parse cleanly, so
r-parseis green on introduction.Why advisory secrets
The repo has known secret-hygiene items in flight — the hardcoded dev cookie password in
auth.Rand the committed devusers.sqlite. Turning on a blocking gitleaks gate before those are cleared would fail every build. It runs advisory now; the follow-up secrets-hygiene PR flips it to blocking.Follow-ups (separate PRs)
lintrstyle job once the tree is cleaned.🤖 Generated with Claude Code