Skip to content

Pull requests: a-r-j/graphein

New pull request New
16 Open 240 Closed
16 Open 240 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

[pre-commit.ci] pre-commit autoupdate
#452 opened May 25, 2026 by pre-commit-ci Bot Loading…
1
Uv package management
#451 opened May 23, 2026 by a-r-j Owner Loading…
5 tasks
1
Tmpfile
#450 opened May 23, 2026 by a-r-j Owner Loading…
1 of 5 tasks
1
Add configurable timeout for PyMol mesh generation wait loop
#449 opened May 22, 2026 by Copilot AI • Draft
6 of 7 tasks
1
@a-r-j
5
drop requirement on RCSB ligand expo after it has been retired
#445 opened Feb 25, 2026 by a-r-j Owner Loading…
5 tasks
13
Fix incorrect node lookup in distance-based edge generation Fixes #418
#423 opened Apr 9, 2025 by elementare Loading…
3 tasks done
1
1
change import tqdm statement from from tqdm to from tqdm.autonotebook
#422 opened Mar 21, 2025 by kamurani Contributor • Draft
2
Correct the judgment of hydrogen bonds
#370 opened Mar 2, 2024 by ByteRoo Loading…
7
Add the ability for the PDBManager to perform interface-based chain filtering
#333 opened Aug 18, 2023 by amorehead Contributor Loading…
10
RFAM family <-> PDB structure ID mapping
#324 opened Jun 27, 2023 by rvinas Collaborator Loading…
1 of 5 tasks
5
[WIP] Add FASTA Dataset class
#289 opened Mar 29, 2023 by a-r-j Owner Loading…
6 tasks
1
Fix ml dataset
#232 opened Nov 5, 2022 by kamurani Contributor • Draft
1
change the pdb_paths working style and support for loading both local… 1 - Priority P1 High Priority enhancement New feature or request
#214 opened Sep 19, 2022 by 1511878618 Contributor Loading…
1 of 5 tasks
1
27
add ProteinsX dataset classes
#204 opened Aug 2, 2022 by a-r-j Owner Loading…
5 tasks
3
Graph plots
#197 opened Jul 22, 2022 by kamurani Contributor Loading…
3 of 5 tasks
17
Protein_ligand graph support & junction tree feature
#164 opened Apr 24, 2022 by yuanqidu Contributor Loading…
43
ProTip! What’s not been updated in a month: updated:<2026-05-19.