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yusufteppei/README.md

Hi, I'm Zaid 👋

Machine Learning Research Engineer focused on Protein AI, Foundation Models, and Scientific Machine Learning.

Current Focus

🧬 Protein Design • 🧠 Protein Foundation Models • ⚡ Diffusion Models • 📐 Geometric Deep Learning

Featured Projects

AlphaFold2 (from scratch) • scGPT (from scratch) • bioagent

Interests

Protein Design • Drug Discovery • Computational Biology • LLMs

Connect

💼 Linkedin • 📫 Email

**Building research. Engineering reliable systems. Applying AI to biology.**
Open to Research Engineer, Applied ML Engineer, and Computational Biology opportunities.

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  1. alphafold2-mini alphafold2-mini Public

    An Exploratory Implementation of the AlphaFold2 protein folding transformer neural network.

    Python 1 1

  2. scgpt-mini scgpt-mini Public

    My implementation of the original scGPT paper

    Jupyter Notebook

  3. bio-agent bio-agent Public

    A biology-focused AI agent exploring supervised fine-tuning, LoRA, and tool calling with open-source LLMs.

    Jupyter Notebook

  4. breast-cancer-prognosis breast-cancer-prognosis Public

    A project predicting prognosis using transcriptomic and clinical data.

    Jupyter Notebook

  5. protein-mutate protein-mutate Public

    API server to calculate functional impact of an amino acid level mutation of a protein.

    Python

  6. minikdb minikdb Public

    A Key-Value In-Memory Persistent Embedded Database.

    C++