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[WIP] development for release 4.0.5 #25

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[WIP] development for release 4.0.5 #25

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8f2c6a1
Open for development
egonw Dec 28, 2025
9d5cb14
Updated BridgeDb Java to 3.0.30
egonw Jul 10, 2026
aeaf87a
New method of the token
egonw Jul 18, 2026
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3 changes: 2 additions & 1 deletion .github/workflows/maven.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,9 @@ jobs:
run: cd org.pathvisio.lib; mvn clean install -Dgpg.skip -Pjacoco
- name: push JaCoCo stats to codecov.io
uses: codecov/codecov-action@v5
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
with:
directory: 'org.pathvisio.lib'
verbose: true
token: ${{ secrets.CODECOV_TOKEN }}
slug: PathVisio/libGPML
16 changes: 9 additions & 7 deletions org.pathvisio.lib/pom.xml
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Expand Up @@ -2,7 +2,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>org.pathvisio</groupId>
<artifactId>org.pathvisio.libgpml</artifactId>
<version>4.0.4</version>
<version>4.0.5-SNAPSHOT</version>
<packaging>jar</packaging>
<name>libGPML</name>
<description>libGPML is a library for reading, writing, manipulation, and conversion of files and data streams in the GPML (Graphical Pathway Markup Language) format.</description>
Expand All @@ -13,6 +13,8 @@
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>

<bridgedb.version>3.0.30</bridgedb.version>
</properties>

<licenses>
Expand Down Expand Up @@ -77,9 +79,9 @@
</Import-Package>
<Require-Bundle>
org.apache.servicemix.bundles.jdom;bundle-version="2.0.6",
org.bridgedb;bundle-version="3.0.29",
org.bridgedb.bio;bundle-version="3.0.29",
org.bridgedb.rdb;bundle-version="3.0.29",
org.bridgedb;bundle-version="${bridgedb.version}",
org.bridgedb.bio;bundle-version="${bridgedb.version}",
org.bridgedb.rdb;bundle-version="${bridgedb.version}",
org.apache.commons.commons-collections4;bundle-version="4.5.0"
</Require-Bundle>
</instructions>
Expand Down Expand Up @@ -198,17 +200,17 @@
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb</artifactId>
<version>3.0.29</version>
<version>${bridgedb.version}</version>
</dependency>
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb.bio</artifactId>
<version>3.0.29</version>
<version>${bridgedb.version}</version>
</dependency>
<dependency>
<groupId>org.bridgedb</groupId>
<artifactId>org.bridgedb.rdb</artifactId>
<version>3.0.29</version>
<version>${bridgedb.version}</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
Expand Down
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