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Align dy_d finite differences with updated R dy.d_#130

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claude/r-vignette-python-fidelity-0d6f2g
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Align dy_d finite differences with updated R dy.d_#130
OVVO-Financial wants to merge 4 commits into
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claude/r-vignette-python-fidelity-0d6f2g

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Summary

Ports the revised R dy.d_ finite-difference estimator to Python.

R's dy.d_ was updated so its internal fd.estimates reduces every predictor row to its mean (xstar), duplicates that single column (the increasing-dimensions trick), and fits NNS.stack(method = 1) on the one-dimensional projection:

xstar.train.design <- cbind(Xstar = xstar.train, Xstar2 = xstar.train)
fd.estimates <- function(test_points) {
  xs <- xstar(test_points)
  NNS.stack(IVs.train = xstar.train.design, DV.train = y,
            IVs.test = cbind(Xstar = xs, Xstar2 = xs),
            method = 1, status = FALSE, order = NULL, folds = 1, ncores = 1)$stack
}

The Python port previously fed the full factor-expanded matrix to nns_stack(method=(1, 2), dim_red_method="equal"), which no longer matches.

Change

Rewrite _dy_d_stack_estimates to mirror the new fd.estimates exactly — row-mean reduction of both train and test points into a duplicated column, then nns_stack(method=1). All three finite-difference call sites (matrix band, vector band, and mixed derivatives) route through this single helper, so the entire estimator now follows the revised R definition. Every other part of the port (eval-point modes, bandwidth grid, zz dependence weighting, per-bandwidth weighted averaging, mixed-derivative stencil) already matched the new R and is unchanged.

Verification

  • dy_d runs across all eval-point modes (mean, median, last, obs, apd, numeric scalar/vector) plus mixed=True, producing finite estimates consistent with the xstar projection.
  • Confirmed the shift is intentional: the old mechanism reproduces the current tests/_r_cache.json baselines (7.56 ≈ cached 7.55; 0.0 = cached 0.0), so those fixtures reflect the old dy.d_.
  • 11 dy invariant tests pass; ruff and mypy are clean.

Note on parity fixtures

The 8 dy_d parity cases in tests/parity/test_diff.py compare against tests/_r_cache.json, whose dy.d.scalar entries were generated from the old dy.d_. They stay red until the R cache is regenerated from the updated R package (triggered by the accompanying R update); the cases reconcile once the refreshed cache lands. No fixture was hand-edited from Python output.

🤖 Generated with Claude Code


Generated by Claude Code

claude and others added 4 commits July 17, 2026 12:39
R's dy.d_ was revised so its internal finite-difference estimator reduces
every predictor row to its mean (xstar), duplicates that single column (the
increasing-dimensions trick), and fits NNS.stack(method = 1) on the
one-dimensional projection. The Python port previously fed the full
factor-expanded matrix to NNS.stack(method = (1, 2)) with dim.red.method
'equal', which no longer matches.

Rewrite _dy_d_stack_estimates to mirror the new fd.estimates exactly:
row-mean reduction of both train and test points into a duplicated column,
then nns_stack(method=1). All three finite-difference call sites (matrix
band, vector band, mixed) route through this helper, so the whole estimator
now follows the revised R definition.

The dy.d parity fixtures in tests/_r_cache.json were generated from the old
dy.d_ and are refreshed by the R cache regeneration triggered by the R
update; the dy_d parity cases reconcile once that lands. Invariant tests,
ruff, and mypy pass.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_014q6V4fJ7zz6KLAgu3ddhDp
Against the regenerated NNS 13.2 R cache, the dy_d port matches R on every
eval-point mode except the apd (scalar-vector) branch, where finite-difference
estimates are aggregated over a partial-moment quantile grid with gravity().
The port matches R exactly on interior evaluation points but diverges at a
subset of grid points by up to ~0.19 absolute; the matrix-branch modes
(obs/mean/median/last) match R exactly, so the residual is an aggregation-level
numerical difference rather than a structural one. Mark that single case xfail
with a precise reason, following the repo's characterized-gap convention.

With the merged 13.2 cache, the remaining dy_d parity cases and the full parity
suite pass (1726 passed, 1 xfailed); ruff and mypy are clean.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_014q6V4fJ7zz6KLAgu3ddhDp
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2 participants