HarteminkLab

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1. NucID NucID Public

   A Python package for identifying nucleosomes using single-end DNase-seq data

   Jupyter Notebook 6

2. RoboCOP RoboCOP Public

   Jupyter Notebook 4 3

3. cadmium-paper cadmium-paper Public

   Scripts for processing, analyzing, and visualizing MNase-seq, RNA-seq cadmium perturbation time course

   Python 2

4. TOP TOP Public

   R package to predict TF occupancy using DNase-seq or ATAC-seq data

   R 1 1

5. COMPETE COMPETE Public

   Competitive Occupancy: Multi-factor Profile Evaluation of a Thermodynamic Ensemble

   C

6. cell-cycle-deconv cell-cycle-deconv Public

   Code to deconvolve cell cycle transcription using branching processes and CLOCCS parameters

   Jupyter Notebook