Update direct vs. indirect effects analysis code - #7
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Add additional analyses for supplementary figures added during revisions round 1. Add code to analyze indirect effect rates in the Gasperini et al., 2019 dataset to compare K562 DC-TAP-seq target elements and genes to genome-wide elements and genes. Add code to compute bootstrapped confidence intervals for the reported probability of direct effects.
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Add additional analyses for supplementary figures added during revisions round 1. Add code to analyze indirect effect rates in the Gasperini et al., 2019 dataset to compare K562 DC-TAP-seq target elements and genes to genome-wide elements and genes. Add code to compute bootstrapped confidence intervals for the reported probability of direct effects.