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Stage modularity, round 2

Status: Open.

#418 In EdinburghGenomics/Analysis-Driver;

· mwhamgenomics opened on Sep 16, 2019

See if VQSR results can be improved or remove comment in GATK4 pipeline

Status: Open.

#403 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on Jun 12, 2019

Dragen updates

Status: Open.

#401 In EdinburghGenomics/Analysis-Driver;

· mwhamgenomics opened on May 28, 2019

Unmarked sample that have been successfully processed

Status: Open.

#397 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on May 23, 2019

Separate Integration test references from the production ones

enhancement

Status: Open.

#339 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on Jun 14, 2018

Resumable stages

enhancement

Status: Open.

#328 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on May 14, 2018

Scanner reliability

enhancement

new feature

Status: Open.

#325 In EdinburghGenomics/Analysis-Driver;

· mwhamgenomics opened on Mar 22, 2018

Evaluate and possibly implement standardised pipeline

Status: Open.

#324 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on Feb 19, 2018

Integration test: Create new repo for integretion test datasets.

new feature

Status: Open.

#294 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on Nov 20, 2017

Generic DataOutput

Status: Open.

#274 In EdinburghGenomics/Analysis-Driver;

· katieemelianova opened on Aug 16, 2017

Split Dataset and Pipeline run data

Status: Open.

#249 In EdinburghGenomics/Analysis-Driver;

· mwhamgenomics opened on May 16, 2017

Add validation step at the end of the Run processing

Status: Open.

#209 In EdinburghGenomics/Analysis-Driver;

· tcezard opened on Dec 6, 2016