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dtphelan1/README.md

Hi, I'm Dylan! (he/him) πŸ‘‹

I build clinical AI and NLP systems ✨ at Boston Children's Hospital πŸ₯ on the @smart-on-fhir / Cumulus team ☁️. Over the past ~9 years I've contributed to numerous full-stack web development projects πŸ•ΈοΈ in the Healthcare interoperability space; in the past ~2 years I've been working on LLM-based clinical information extraction, designing pipelines that turn unstructured clinical notes into structured, research-ready data across multiple disease studies. I earned my CS Master's from Tufts in 2021 🐘, focused on AI/ML and AI ethics πŸ€–βš–οΈ for public-sector and healthcare applications.

πŸ”¬ What I'm working on now

  • Clinical LLM extraction at scale. I work in the Cumulus ecosystem to enable a model-agnostic NLP extraction platform that runs frontier, open-weight, and locally-hosted models against real FHIR clinical-note corpora, with MLflow experiment tracking for token economics, model parameters, and extraction metrics.
    • We build Cumulus-ETL and Cumulus-Library to extract population-scale data across partner health-sites.
    • We also support a number of specific studies across disease-specific study libraries to enable exploration of domain-specific research questions. Some areas we're using cumulus and LLMs to explore include the relationship between pediatric IBD outcomes and medications, immune-related adverse events in kidney-transplant patients, and more!
  • Evaluation & annotation. I translate clinical chart-review guidelines into Label Studio annotation interfaces so clinicians can produce the gold-standard datasets our extraction pipelines are measured against.
  • Research & publishing. I work with my colleagues to publish on the impact that interoperability and LLM systems can have on multiple levels of clinical care.

πŸ”­ Previously

  • @MITRE: advancing oncology through data standards like FHIR and mCODE β€” we built the mCODE Extraction Framework to enable structured data extraction in support of an oncology clinical trial, and we also built FluxNotes to imagine what the future of multi-modal data capture could look like – before LLMs πŸ˜†!
  • 🌱 Ongoing interest in fairness, accountability, transparency, and power in healthcare algorithms β€” and what technologists, regulators, and citizens can do about them.
  • πŸ‘― Local civic-data projects like visualizing Arlington Town Meeting Member voting histories with @GrahamGoudeau and @mgramigna.

πŸ“« Reach me: email preferred β€” dtphelan1<<at>>gmail<<dot>>com Β· 🌐 dylanphelan.tech Β· πŸ˜„ Pronouns: he/him

Pinned Loading

  1. smart-on-fhir/cumulus-etl smart-on-fhir/cumulus-etl Public

    Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

    Python 25 9

  2. smart-on-fhir/cumulus-library smart-on-fhir/cumulus-library Public

    A framework for designing, executing, and distributing SQL queries packaged as "studies", e.g., for quality monitoring, clinical research, or public health

    Python 6 4

  3. mcode/mcode-extraction-framework mcode/mcode-extraction-framework Public

    A Node.js framework for extracting mCODE FHIR resources

    JavaScript 23 2

  4. FluxNotes/flux FluxNotes/flux Public

    Flux: Data Capture Prototype for Clinical Oncology

    JavaScript 21 19

  5. mggg/rcv-webapp mggg/rcv-webapp Public

    A Web Application for simulating RCV elections and visualizing their impact on proportional representation

    JavaScript 3 1

  6. arlington-ma-town-member-voting arlington-ma-town-member-voting Public

    Vote Smart Arlington is providing transparency into the voting history of elected arlington town meeting members.

    JavaScript 3