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Update versions to shinyapp branch #86

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Merged
ritamtbsilva merged 6 commits into from
Jun 15, 2026
Merged

Update versions to shinyapp branch #86

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55addc4
bump x.y.z version to even y prior to creation of RELEASE_3_23 branch
jwokaty Apr 28, 2026
ec844f3
bump x.y.z version to odd y following creation of RELEASE_3_23 branch
jwokaty Apr 28, 2026
6925d8e
release bioc 3.23
ritamtbsilva May 8, 2026
d319036
bioc > v1.2
ritamtbsilva May 8, 2026
1555400
Merge pull request #82 from DiseaseTranscriptomicsLab/default
ritamtbsilva May 8, 2026
ca42dcf
Merge pull request #84 from DiseaseTranscriptomicsLab/main
ritamtbsilva May 8, 2026
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2 changes: 1 addition & 1 deletion DESCRIPTION
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@@ -1,6 +1,6 @@
Package: markeR
Title: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers
Version: 1.1.2
Version: 1.2
Authors@R:
c(
person("Rita", "Martins-Silva",
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2 changes: 1 addition & 1 deletion README.Rmd
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Expand Up @@ -30,7 +30,7 @@ knitr::opts_chunk$set(

> **To cite `markeR` please use:**
>
> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.1.2, https://bioconductor.org/packages/markeR.
> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.2, https://bioconductor.org/packages/markeR.

The folder `inst/Paper/` is in the **paper** branch and contains all scripts and materials used in the original `markeR` paper to reproduce analyses and figures. You can browse it [here](https://github.com/DiseaseTranscriptomicsLab/markeR/tree/paper/inst/Paper).

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -26,7 +26,7 @@ across experimental and clinical phenotypes.
>
> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). *markeR: An R
> Toolkit for Evaluating Gene Signatures as Phenotypic Markers*.
> <doi:10.18129/B9.bioc.markeR>, R package version 1.1.2,
> <doi:10.18129/B9.bioc.markeR>, R package version 1.2,
> <https://bioconductor.org/packages/markeR>.

The folder `inst/Paper/` is in the **paper** branch and contains all
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