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E02 auto mib #340

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Merged
fallars merged 3 commits into from
Aug 19, 2026
Merged

E02 auto mib #340

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0c87188
Merge pull request #338 from DiamondLightSource/main
fallars Aug 19, 2026
e20a602
removing hard coded path to dead pixel mask and instead trying to loa…
fallars Aug 19, 2026
a7847bc
Merge pull request #339 from fallars/E02_auto_mib
fallars Aug 19, 2026
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8 changes: 1 addition & 7 deletions e02/templates/Notebook_simple.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -27,10 +27,6 @@ spec:
hostPath:
path: "{{`{{ workflow.parameters.visitdir }}`}}"
type: Directory
- name: software
hostPath:
path: /dls_sw/e02/medipix_mask
type: Directory
volumeClaimTemplates:
- metadata:
name: tmp
Expand Down Expand Up @@ -77,8 +73,6 @@ spec:
mountPath: "{{`{{ workflow.parameters.visitdir }}`}}"
- name: tmp
mountPath: /tmp
- name: software
mountPath: /dls_sw/e02/medipix_mask
command: [bash]
source: |
ERROR_TXT="raise error"
Expand All @@ -89,7 +83,7 @@ spec:
-p visit "{{`{{ workflow.parameters.visitdir }}`}}" \
-p sample "{{`{{ workflow.parameters.sample }}`}}" \
-p timestamp "{{`{{workflow.parameters.timestamp}}`}}" \
-p maskpath /software/29042024_12bitmask2.h5 \
-p maskpath "/home/ruska/29042024_12bitmask2.h5" \
-p lower "{{`{{workflow.parameters.thresh_lower}}`}}" \
-p upper "{{`{{workflow.parameters.thresh_upper}}`}}" \
> $OUTPUT/papermill.log 2>&1
Expand Down