Update submit.py

[NellyMitnik]

Added cp output.* "$PBS_O_WORKDIR/" to get output.out file in gaussian runs on ZEUS.

[alongd]

Closing as not applicable to the current Zeus script. On Zeus, Gaussian's output name is fixed by the submit script itself — g16 < input.gjf > input.log — so no output.* file is ever produced for the added cp output.* line to match. ARC also reads Gaussian output from input.log (output_filenames['gaussian'] in arc/settings/settings.py), which the script already copies back via cp input.* (the template has since been rewritten on main to run in /gtmp scratch, and it likewise copies input.* and check.chk back).

Note: there IS a real output-name mismatch of this kind on Atlas — Servers/Atlas/.arc/submit.py redirects g09 to output.out while ARC expects input.log — which may be the issue that motivated this PR. That deserves a fix in the Atlas template rather than an extra copy on Zeus. Thanks @NellyMitnik, and please reopen with details if you hit a concrete missing-output case on Zeus.