NEXT_TASKS: record magnetite-redox causal curation (#246) + Edison fix (#245)#248
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#245) Add CommunityMech:000268 (Rhodopseudomonas-Geobacter magnetite battery) to the causal "done" list (~60/304), point Next at ORNL trophic model 000176, and replace the Edison env-shadowing workaround note with the runner fix (#245): load_api_key() now treats the repo .env FILE as source of truth, so a plain `just research-community-causal <id>` works with no `env -u`. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Pull request overview
Updates the project’s curation backlog notes to reflect recent causal-graph work and to replace a now-obsolete Edison auth workaround with the runner-side fix, keeping the “what’s done / what’s next” guidance accurate for ongoing curation.
Changes:
- Add
CommunityMech:000268(Rhodopseudomonas–Geobacter magnetite “battery” loop) to the “Done so far” causal-graph list and increment progress count (~60/304). - Update the “Next” guidance to point at
ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model(000176) as a suggested follow-on target. - Replace the Edison key-shadowing workaround instructions with the #245 runner fix description (repo
.envtreated as source of truth viadotenv_values).
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| continue on high-value syntrophies (e.g. `ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model` | ||
| 000176, 4 nodes/0 downstream); always use the RECORD's canonical taxon ids (Edison |
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Doc-only backlog reconciliation:
CommunityMech:000268(Rhodopseudomonas-Geobacter magnetite "battery") to the causal-graph "done so far" list (Rhodopseudomonas-Geobacter magnetite redox: curate causal graph #246); count ~59 → ~60 / 304; point Next atORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model(000176).load_api_key()now treats the repo.envfile as the source of truth, so a plainjust research-community-causal <id>works with noenv -u. Notes that.bash_profile's export was already commented out; the stale value was only inherited into the launching terminal.🤖 Generated with Claude Code