Maint/adapt to updated dependencies - #9
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- Fix CrackFront.IO.IO.NetCDF → CrackFront.IO.NetCDF (spurious double IO in module path) across all source, test, example, and helper files - Update NuMPI IO API in propagate_sphere_pytorch: make_mpi_file_view → mpi_open, nb_grid_pts → array_shape, positional read args → keyword args (subdomain_locations, nb_subdomain_grid_pts) - Bump dependency versions: SurfaceTopography >=1.20.0, ContactMechanics >=1.8.1, scipy >=1.9.0; add NuMPI >=0.5.0 explicitly - Raise Python minimum from 3.8 to 3.10; relax overly-specific netCDF4 and numpy version pins; update flake8 bound to <8 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
- ubuntu-22.04 → ubuntu-24.04; timeout 45 → 90 min - actions/checkout@v3 → @v4, actions/setup-python@v4 → @v5 - Add mugrid-version matrix entry (0.105.0); build muGrid from source with --no-binary to pick up netCDF support needed by SurfaceTopography - Add libhdf5-dev, libnetcdf-dev, libopenblas-dev to apt dependencies - Consolidate install into a single step with set -x for clearer logs - Drop Python 3.8/3.9 (now require >=3.10); add 3.12, 3.13, 3.14 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…rting Move penetration from method signatures (gradient, hessian_product, dump) into instance state (self.penetration) for SphereCrackFrontERRPenetrationLin and SphereCrackFrontERRPenetrationFull, consistent with the Energy family of classes. Callers now set cf.penetration = penetration before each optimization step. Add conftest.py with PlotReporter fixture and --report-plots flag (modeled after roughperimeter_pr) so all test plots are captured in an HTML report instead of blocking the terminal. Add pytest-html to test dependencies. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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