Search results

Vignette uses hg18 TxDb

Status: Open.

#67 In Bioconductor/Rsamtools;

· vjcitn opened on Mar 31, 2026

Unrecognized nucleotide 'B' error when sequence field in BAM file omitted

Status: Open.

#64 In Bioconductor/Rsamtools;

· ChangqingW opened on Jan 29, 2025

Samtools Stats Execution and Parsing

Status: Open.

#63 In Bioconductor/Rsamtools;

· DarioS opened on Nov 21, 2024

FEATURE REQUEST: Improve seqinfo(<BamFile>) to return the genome assembly associated with each sequence

Status: Open.

#61 In Bioconductor/Rsamtools;

· hpages opened on Feb 14, 2024

Support for CSI indexes

Status: Open.

#58 In Bioconductor/Rsamtools;

· diego-rt opened on Sep 17, 2023

CRAM support - why not?

Status: Open.

#56 In Bioconductor/Rsamtools;

· pd3 opened on Aug 22, 2023

Rsamtools with multiple threads?

Status: Open.

#55 In Bioconductor/Rsamtools;

· junjunlab opened on May 11, 2023

min_nucleotide_depth parameter of PileupParam doesn't take 0

Status: Open.

#19 In Bioconductor/Rsamtools;

· sarahwajid opened on Feb 18, 2021

Rsamtools cannot handle csi index?

Status: Open.

#17 In Bioconductor/Rsamtools;

· Mailinnia opened on Dec 1, 2020

Bug in windows version of Rsamtools Fasta sequence retrieval

Status: Open.

#14 In Bioconductor/Rsamtools;

· dnieuw opened on Oct 16, 2019

Rsamtools::pileup counts overlapping paired-end reads twice

Status: Open.

#13 In Bioconductor/Rsamtools;

· alkodsi opened on Oct 10, 2019

Error with getSeq from opened fasta file (Rsamtools 2.0.2)

Status: Open.

#12 In Bioconductor/Rsamtools;

· farshadf opened on Oct 4, 2019