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[Bug] Promoter intervals exceed chromosome boundaries on chrM (hg38)

Status: Open.

#73 In Bioconductor/GenomicFeatures;

· XinzeWu opened on Aug 21, 2025

Error in x$.self$finalize() : attempt to apply non-function

Status: Open.

#72 In Bioconductor/GenomicFeatures;

· ChangqingW opened on Jul 18, 2025

mirbase.db is out of date and is likely to be deprecated

Status: Open.

#71 In Bioconductor/GenomicFeatures;

· vjcitn opened on Mar 6, 2025

makeTxDbFromEnsembl no longer connects to the right Ensembl database for Homo sapiens

Status: Open.

#69 In Bioconductor/GenomicFeatures;

· divibisan opened on Sep 20, 2024

How to import pseudogenes from GFF3 file as GRanges object?

Status: Open.

#68 In Bioconductor/GenomicFeatures;

· zhewa opened on Apr 10, 2024

mapToTranscripts reports incorrect regions when supplied GRangesList containing some empty transcripts

Status: Open.

#54 In Bioconductor/GenomicFeatures;

· kriemo opened on Jan 12, 2023

coverageByTranscript weights ?

enhancement

Status: Open.

#19 In Bioconductor/GenomicFeatures;

· Roleren opened on Jan 31, 2020

pmapFromTranscripts strange behaviour

Status: Open.

#10 In Bioconductor/GenomicFeatures;

· Roleren opened on Sep 19, 2018

Make cdsBy(txdb, by="tx") return the CDS phase

Status: Open.

#9 In Bioconductor/GenomicFeatures;

· hpages opened on Aug 14, 2018