sql fixes#322
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ThaleMine Updated
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Added eFP Grape
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- fix agi_to_probset typo (was agi_to_probst) in gene_id_utils.py - add data_type field to microarray /samples endpoint response - switch endpoint to efp_species_view_info_typed.json - add typed eFP view info JSON and data type annotation script - ignore large SQL dump files from git tracking
| # https://bar.utoronto.ca/api/efp_image/efp_cannabis/Cannabis_Atlas/Absolute/AGQN03000001 | ||
| response = self.app_client.get("/efp_image/efp_cannabis/Cannabis_Atlas/Absolute/AGQN03000001") | ||
| if response.status_code == 503: | ||
| self.skipTest("eFP image service (bar.utoronto.ca) is unreachable from this environment") |
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@rmobmina @asherpasha Outside of the scope of your project but is OK add. May need to remove or justify this. I think this was added because you tests were failing and CoPilot/Claude went through all the tests and added fallbacks. If we waant to keep it consistent we add this 503 check to all URLs and make it a function.
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Overall LGTM. Great removal of SQLite, unnecessary files (keep project/background files to yourself or add it to your own local git ignore settings ), will still need to gloss over all these manually over a pair programming session. The 3.10.18 python CI/CD error is due to versioning, we will drop python 3.10 soon anyways. Ready to merge @asherpasha Then we can merge my GAIA endpoint addition |
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