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Dockyard Security Overview

Dockyard provides multiple layers of security to ensure safe distribution of MCP server containers and agent skill artifacts.

Security Guarantees

When you use a Dockyard container or skill artifact, you can be confident that:

  1. Source Integrity - The image/artifact was built from the exact source code in this repository (for skills, from the exact upstream commit pinned in spec.ref)
  2. Build Transparency - Full build provenance is available and verifiable
  3. Security Scanning - MCP servers are scanned with mcp-scanner and skills are scanned with skill-scanner before packaging
  4. Container Vulnerability Scanning - MCP server images are additionally scanned with Trivy for CVEs, secrets, and misconfigurations
  5. Dependency Tracking - Complete SBOM is available for vulnerability management
  6. Non-repudiation - Signatures prove the image/artifact came from our CI/CD pipeline
  7. Continuous Monitoring - Weekly scans catch newly disclosed vulnerabilities in MCP server containers

MCP Security Scanning

All MCP servers are scanned using Cisco AI Defense mcp-scanner before building containers. This scan is blocking - servers that fail cannot be packaged.

What We Scan For

Category Description
Prompt Injection Dangerous patterns in tool descriptions that could be exploited
Toxic Flows Tool combinations that could lead to destructive behaviors
Tool Poisoning Malicious tool implementations
Cross-Origin Escalation Potential privilege escalation vulnerabilities
Rug Pull Attacks Suspicious patterns indicating malicious intent

Scan Results

When vulnerabilities are found in a PR, you'll see a detailed report:

## MCP Security Scan Results

### your-mcp-server
- **Status**: Failed
- **Tools scanned**: 3
- **Vulnerabilities found**: 2

**Security issues detected:**
- **[W001]** Tool description contains dangerous words
- **[TF002]** Destructive toxic flow detected

Allowing Known Issues

Some warnings may be false positives for containerized deployments. Add them to the allowlist in your spec.yaml:

security:
  allowed_issues:
    - code: "AITech-1.1"
      reason: "Imperative instructions required for proper AI agent operation"
    - code: "AITech-9.1"
      reason: "Destructive flow mitigated by container sandboxing"

Each allowed issue must include:

  • code - The issue code from mcp-scanner
  • reason - Clear explanation of why it's acceptable

Agent Skill Security Scanning

All agent skills are scanned using Cisco AI Defense skill-scanner at the pinned commit before packaging. This scan is blocking at HIGH severity and above — skills with unallowlisted findings at or above that threshold cannot be packaged.

What We Scan For

Skill-scanner runs pattern-based (YARA/ATR) and prompt-injection rule packs, plus optional LLM-based semantic and behavioral (AST/taint) analysis, looking for the same broad categories as mcp-scanner (prompt injection, tool/agent poisoning, credential harvesting, PII exposure) applied to a skill's SKILL.md and reference files instead of MCP tool descriptions.

Allowing Known Issues

Skill documentation is prose- and example-heavy, so pattern rules produce many false positives (shell variable expansion in documented setup commands, code-fence language tokens, example IP addresses, placeholder credentials). Add them to the allowlist in the skill's spec.yaml, matching by rule_id (exact) or category (broader):

security:
  allowed_issues:
    - rule_id: ATR_2026_00066
      reason: "FP: matched shell variable expansion (`${TOKEN}`) in a
        documented setup command (SKILL.md:45) — standard shell syntax,
        not injected secrets."

Each allowed issue must include:

  • rule_id (or category) - The finding identifier from skill-scanner
  • reason - Clear explanation, citing the specific matched text/location, of why it's a false positive or an accepted risk

See Adding Skills for the full workflow, and scripts/skill-scan/README.md for the scanner wrapper scripts.

Container Vulnerability Scanning

Built containers are scanned with Trivy for:

Category Description
Vulnerabilities CVEs in OS packages and dependencies (CRITICAL, HIGH, MEDIUM)
Secrets Exposed API keys, tokens, credentials
Misconfigurations Security issues in container configuration

Scan Schedule

  • Every PR - Immediate feedback on new/changed containers
  • On main branch - Scans all published images after build
  • Weekly (Monday 2am UTC) - Comprehensive scans to catch new CVEs
  • Manual trigger - On-demand via GitHub Actions

Viewing Results

Trivy results are uploaded to the GitHub Security tab:

https://github.com/stacklok/dockyard/security/code-scanning

Filter by trivy-{server-name} to see specific results.

Container Signing

All images are signed with Sigstore/Cosign using keyless OIDC via GitHub Actions.

Verify Image Signature

cosign verify \
  --certificate-identity-regexp "https://github.com/stacklok/dockyard/.github/workflows/build-containers.yml@refs/heads/.*" \
  --certificate-oidc-issuer https://token.actions.githubusercontent.com \
  ghcr.io/stacklok/dockyard/npx/context7:2.1.0

Container Attestations

Each image includes multiple attestations:

Type Format Description
SBOM SPDX Software Bill of Materials
Build Provenance SLSA Build integrity attestation
MCP Security Scan SCAI v0.3 Security scan results
Signature Sigstore Keyless OIDC signature

View Attestations

# View SBOM
docker buildx imagetools inspect \
  ghcr.io/stacklok/dockyard/npx/context7:2.1.0 \
  --format "{{ json .SBOM }}"

# View Provenance
docker buildx imagetools inspect \
  ghcr.io/stacklok/dockyard/npx/context7:2.1.0 \
  --format "{{ json .Provenance }}"

# View Security Scan Attestation
cosign verify-attestation \
  --type https://in-toto.io/attestation/scai/v0.3 \
  --certificate-identity-regexp "https://github.com/stacklok/dockyard/.github/workflows/build-containers.yml@refs/heads/.*" \
  --certificate-oidc-issuer https://token.actions.githubusercontent.com \
  ghcr.io/stacklok/dockyard/npx/context7:2.1.0

For detailed attestation schemas and policy examples, see Container Attestations.

Skill artifacts get the same SBOM, build provenance, and SCAI security-scan attestations, signed by the build-skills.yml workflow instead of build-containers.yml — substitute that workflow name in the --certificate-identity-regexp above and the artifact reference with ghcr.io/stacklok/dockyard/skills/{name}:{version}. See Adding Skills.

Package Provenance

Dockyard verifies package provenance for npm and PyPI packages before building:

  • npm - Checks for signatures and modern Sigstore attestations
  • PyPI - Verifies PEP 740 attestations and Trusted Publishers

For details on provenance verification, see Package Provenance.

Policy Enforcement

SCAI attestations integrate with policy engines for Kubernetes:

  • Kyverno - Verify attestations before pod deployment
  • OPA/Gatekeeper - Custom policies based on scan results

Example policies are provided in Container Attestations.

Reporting Security Issues

If you discover a security vulnerability:

  1. Do NOT disclose publicly until we've had a chance to fix it
  2. Do NOT use GitHub issues for security reports
  3. Follow the process in SECURITY.MD