diff --git a/_data/publications/publications.csv b/_data/publications/publications.csv index 3421cda..1d6dad4 100644 --- a/_data/publications/publications.csv +++ b/_data/publications/publications.csv @@ -1,6 +1,12 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages +42442923,PMC13364513,10.1002/nbm.70355,High-Resolution Diffusion Kurtosis Imaging of Hippocampus Subfields Across the Healthy Lifespan,"['Stack-Sanchez P', 'Gross DW', 'Khan AR', 'Beaulieu C']",2026,8,1,NMR Biomed,39,8,e70355 +41531669,PMC12794307,10.1162/IMAG.a.1080,Revisiting the interpretation of axon diameter mapping using higher-order signal representations,"['Karat BG', 'Wren-Jarvis J', 'Raven EP', 'Khan AR', 'Jones DK', 'Palombo M', 'Veraart J']",2026,8,1,Imaging Neurosci (Camb),4,, +42456416,,10.1016/j.yebeh.2026.111189,Characterizing functional connectivity alterations in functional/ dissociative seizures using resting-state and naturalistic fMRI,"['Moscol G', 'Castrilli B', 'Bucha Jain P', 'Mofrad MH', 'Jafari A', 'Aur D', 'Yartey E', 'Muller L', 'Khan AR', 'Johnsrude IS', 'Kasa LW', 'Menon RS', 'Mirsattari SM']",2026,7,15,Epilepsy Behav,184,,111189 +42465432,PMC13370454,10.1101/2024.09.05.610266,Mapping the topographic organization of the human zona incerta using diffusion MRI,"['Haast RA', 'Kai J', 'Taha A', 'Liu V', 'Kasa LW', 'Gilmore G', 'Guye M', 'Khan AR', 'Lau JC']",2026,7,10,bioRxiv,,, +42120698,PMC13167817,10.1007/s11682-026-01162-6,Longitudinal evaluation of hippocampal subfields volumes and episodic memory in breast cancer patients and healthy controls,"['Lerosier B', 'Segobin S', 'Allouache D', 'Noal S', 'Levy C', 'Khan AR', 'Karat BG', 'Christy F', 'Joly F', 'Chetelat G', 'Eustache F', 'Giffard B', 'Perrier J']",2026,5,13,Brain Imaging Behav,20,3, +41680562,PMC13009190,10.1038/s42003-026-09622-x,Microstructural variation of hippocampal substructures across childhood and adolescence quantified with high-gradient diffusion MRI,"['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']",2026,2,12,Commun Biol,9,1, 41280080,PMC12632981,10.1101/2025.10.15.682705,Hippocampal grey matter changes across scales in Alzheimer's Disease,"['Karat BG', 'Farahani MV', 'Davidson M', 'Thurairajah A', 'Taha A', 'Schmitz TW', 'Khan AR']",2025,10,15,bioRxiv,,, -41034610,PMC12510884,10.1038/s41592-025-02783-3,HippoMaps: multiscale cartography of human hippocampal organization,"['DeKraker J', 'Cabalo DG', 'Royer J', 'Ngo A', 'Khan AR', 'Karat BG', 'Benkarim O', 'Rodriguez-Cruces R', 'Frauscher B', 'Pana R', 'Hansen JY', 'Misic B', 'Valk SL', 'Lau JC', 'Kirschner M', 'Bernasconi A', 'Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Evans AC', 'Bernhardt BC']",2025,10,1,Nat Methods,22,10,2211-2222 +41034610,PMC12510884,10.1038/s41592-025-02783-3,HippoMaps: multiscale cartography of human hippocampal organization,"['DeKraker J', 'Cabalo DG', 'Royer J', 'Ngo A', 'Khan AR', 'Karat BG', 'Benkarim O', 'Rodriguez-Cruces R', 'Frauscher B', 'Pana R', 'Hansen JY', 'Misic B', 'Valk SL', 'Lau JC', 'Kirschner M', 'Bernasconi A', 'Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Evans AC', 'Bernhardt BC']",2025,10,1,Nat Methods,22,10.0,2211-2222 40505888,,10.1016/j.bpsc.2025.06.001,Neurite Density and Kurtosis in the Gray Matter of People With Early Schizophrenia,"['Van Dyken PC', 'Khan AR', 'Palaniyappan L']",2025,6,10,Biol Psychiatry Cogn Neurosci Neuroimaging,,, 40202728,PMC11983296,10.1001/jamapsychiatry.2025.0432,Convergence of Cannabis and Psychosis on the Dopamine System,"['Ahrens J', 'Ford SD', 'Schaefer B', 'Reese D', 'Khan AR', 'Tibbo P', 'Rabin R', 'Cassidy CM', 'Palaniyappan L']",2025,6,1,JAMA Psychiatry,82,6.0,609-617 40404790,PMC12098761,10.1038/s42003-025-08165-x,Early life stress impairs hippocampal subfield myelination,"['Nichols ES', 'Karat BG', 'Grace M', 'Bezanson S', 'Khan AR', 'Duerden EG']",2025,5,22,Commun Biol,8,1.0,785 diff --git a/get_publications.ipynb b/get_publications.ipynb index 967df92..293b7e6 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.00232, - "end_time": "2026-01-01T05:23:23.506811", + "duration": 0.00258, + "end_time": "2026-08-01T07:24:30.172294", "exception": false, - "start_time": "2026-01-01T05:23:23.504491", + "start_time": "2026-08-01T07:24:30.169714", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2026-01-01T05:23:23.511797Z", - "iopub.status.busy": "2026-01-01T05:23:23.511485Z", - "iopub.status.idle": "2026-01-01T05:23:23.836326Z", - "shell.execute_reply": "2026-01-01T05:23:23.835734Z" + "iopub.execute_input": "2026-08-01T07:24:30.177913Z", + "iopub.status.busy": "2026-08-01T07:24:30.177147Z", + "iopub.status.idle": "2026-08-01T07:24:31.361448Z", + "shell.execute_reply": "2026-08-01T07:24:31.360754Z" }, "papermill": { - "duration": 0.329352, - "end_time": "2026-01-01T05:23:23.838028", + "duration": 1.189093, + "end_time": "2026-08-01T07:24:31.363315", "exception": false, - "start_time": "2026-01-01T05:23:23.508676", + "start_time": "2026-08-01T07:24:30.174222", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001712, - "end_time": "2026-01-01T05:23:23.841704", + "duration": 0.001727, + "end_time": "2026-08-01T07:24:31.367095", "exception": false, - "start_time": "2026-01-01T05:23:23.839992", + "start_time": "2026-08-01T07:24:31.365368", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2026-01-01T05:23:23.845945Z", - "iopub.status.busy": "2026-01-01T05:23:23.845684Z", - "iopub.status.idle": "2026-01-01T05:23:23.853140Z", - "shell.execute_reply": "2026-01-01T05:23:23.852521Z" + "iopub.execute_input": "2026-08-01T07:24:31.372041Z", + "iopub.status.busy": "2026-08-01T07:24:31.371334Z", + "iopub.status.idle": "2026-08-01T07:24:31.378934Z", + "shell.execute_reply": "2026-08-01T07:24:31.378255Z" }, "papermill": { - "duration": 0.011364, - "end_time": "2026-01-01T05:23:23.854682", + "duration": 0.01147, + "end_time": "2026-08-01T07:24:31.380303", "exception": false, - "start_time": "2026-01-01T05:23:23.843318", + "start_time": "2026-08-01T07:24:31.368833", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001683, - "end_time": "2026-01-01T05:23:23.858059", + "duration": 0.001635, + "end_time": "2026-08-01T07:24:31.383764", "exception": false, - "start_time": "2026-01-01T05:23:23.856376", + "start_time": "2026-08-01T07:24:31.382129", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2026-01-01T05:23:23.863510Z", - "iopub.status.busy": "2026-01-01T05:23:23.863124Z", - "iopub.status.idle": "2026-01-01T05:23:23.866777Z", - "shell.execute_reply": "2026-01-01T05:23:23.866057Z" + "iopub.execute_input": "2026-08-01T07:24:31.388195Z", + "iopub.status.busy": "2026-08-01T07:24:31.387793Z", + "iopub.status.idle": "2026-08-01T07:24:31.391650Z", + "shell.execute_reply": "2026-08-01T07:24:31.390920Z" }, "papermill": { - "duration": 0.007863, - "end_time": "2026-01-01T05:23:23.868200", + "duration": 0.007615, + "end_time": "2026-08-01T07:24:31.393009", "exception": false, - "start_time": "2026-01-01T05:23:23.860337", + "start_time": "2026-08-01T07:24:31.385394", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2026-01-01T05:23:23.872898Z", - "iopub.status.busy": "2026-01-01T05:23:23.872356Z", - "iopub.status.idle": "2026-01-01T05:23:25.898608Z", - "shell.execute_reply": "2026-01-01T05:23:25.897907Z" + "iopub.execute_input": "2026-08-01T07:24:31.397476Z", + "iopub.status.busy": "2026-08-01T07:24:31.397101Z", + "iopub.status.idle": "2026-08-01T07:24:33.065857Z", + "shell.execute_reply": "2026-08-01T07:24:33.065151Z" }, "papermill": { - "duration": 2.030165, - "end_time": "2026-01-01T05:23:25.900187", + "duration": 1.672525, + "end_time": "2026-08-01T07:24:33.067294", "exception": false, - "start_time": "2026-01-01T05:23:23.870022", + "start_time": "2026-08-01T07:24:31.394769", "status": "completed" }, "scrolled": true, @@ -187,7 +187,7 @@ "text": [ "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n", " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n", - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 93\n" + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 99\n" ] }, { @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_2325/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_2588/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2026-01-01T05:23:25.905439Z", - "iopub.status.busy": "2026-01-01T05:23:25.904953Z", - "iopub.status.idle": "2026-01-01T05:23:25.912066Z", - "shell.execute_reply": "2026-01-01T05:23:25.911243Z" + "iopub.execute_input": "2026-08-01T07:24:33.072235Z", + "iopub.status.busy": "2026-08-01T07:24:33.072038Z", + "iopub.status.idle": "2026-08-01T07:24:33.079369Z", + "shell.execute_reply": "2026-08-01T07:24:33.078647Z" }, "papermill": { - "duration": 0.011109, - "end_time": "2026-01-01T05:23:25.913406", + "duration": 0.011376, + "end_time": "2026-08-01T07:24:33.080833", "exception": false, - "start_time": "2026-01-01T05:23:25.902297", + "start_time": "2026-08-01T07:24:33.069457", "status": "completed" }, "tags": [] @@ -294,17 +294,33 @@ "name": "stdout", "output_type": "stream", "text": [ - "89 total articles found.\n", - "2 new articles found.\n", + "95 total articles found.\n", + "6 new articles found.\n", "\n", "New publications found:\n", - "Title: Hippocampal grey matter changes across scales in Alzheimer's Disease (bioRxiv)\n", - "Authors: ['Karat BG', 'Farahani MV', 'Davidson M', 'Thurairajah A', 'Taha A', 'Schmitz TW', 'Khan AR']\n", - "Journal (Date): bioRxiv (10/15/2025)\n", + "Title: Mapping the topographic organization of the human zona incerta using diffusion MRI (bioRxiv)\n", + "Authors: ['Haast RA', 'Kai J', 'Taha A', 'Liu V', 'Kasa LW', 'Gilmore G', 'Guye M', 'Khan AR', 'Lau JC']\n", + "Journal (Date): bioRxiv (7/10/2026)\n", "\n", - "Title: HippoMaps: multiscale cartography of human hippocampal organization (Nat Methods)\n", - "Authors: ['DeKraker J', 'Cabalo DG', 'Royer J', 'Ngo A', 'Khan AR', 'Karat BG', 'Benkarim O', 'Rodriguez-Cruces R', 'Frauscher B', 'Pana R', 'Hansen JY', 'Misic B', 'Valk SL', 'Lau JC', 'Kirschner M', 'Bernasconi A', 'Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Evans AC', 'Bernhardt BC']\n", - "Journal (Date): Nat Methods (10/1/2025)\n", + "Title: Characterizing functional connectivity alterations in functional/ dissociative seizures using resting-state and naturalistic fMRI (Epilepsy Behav)\n", + "Authors: ['Moscol G', 'Castrilli B', 'Bucha Jain P', 'Mofrad MH', 'Jafari A', 'Aur D', 'Yartey E', 'Muller L', 'Khan AR', 'Johnsrude IS', 'Kasa LW', 'Menon RS', 'Mirsattari SM']\n", + "Journal (Date): Epilepsy Behav (7/15/2026)\n", + "\n", + "Title: High-Resolution Diffusion Kurtosis Imaging of Hippocampus Subfields Across the Healthy Lifespan (NMR Biomed)\n", + "Authors: ['Stack-Sanchez P', 'Gross DW', 'Khan AR', 'Beaulieu C']\n", + "Journal (Date): NMR Biomed (8/1/2026)\n", + "\n", + "Title: Longitudinal evaluation of hippocampal subfields volumes and episodic memory in breast cancer patients and healthy controls (Brain Imaging Behav)\n", + "Authors: ['Lerosier B', 'Segobin S', 'Allouache D', 'Noal S', 'Levy C', 'Khan AR', 'Karat BG', 'Christy F', 'Joly F', 'Chetelat G', 'Eustache F', 'Giffard B', 'Perrier J']\n", + "Journal (Date): Brain Imaging Behav (5/13/2026)\n", + "\n", + "Title: Microstructural variation of hippocampal substructures across childhood and adolescence quantified with high-gradient diffusion MRI (Commun Biol)\n", + "Authors: ['Karat BG', 'Genc S', 'Raven EP', 'Palombo M', 'Khan AR', 'Jones DK']\n", + "Journal (Date): Commun Biol (2/12/2026)\n", + "\n", + "Title: Revisiting the interpretation of axon diameter mapping using higher-order signal representations (Imaging Neurosci (Camb))\n", + "Authors: ['Karat BG', 'Wren-Jarvis J', 'Raven EP', 'Khan AR', 'Jones DK', 'Palombo M', 'Veraart J']\n", + "Journal (Date): Imaging Neurosci (Camb) (8/1/2026)\n", "\n" ] } @@ -331,16 +347,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2026-01-01T05:23:25.918715Z", - "iopub.status.busy": "2026-01-01T05:23:25.918188Z", - "iopub.status.idle": "2026-01-01T05:23:25.931770Z", - "shell.execute_reply": "2026-01-01T05:23:25.931061Z" + "iopub.execute_input": "2026-08-01T07:24:33.085892Z", + "iopub.status.busy": "2026-08-01T07:24:33.085475Z", + "iopub.status.idle": "2026-08-01T07:24:33.105998Z", + "shell.execute_reply": "2026-08-01T07:24:33.105428Z" }, "papermill": { - "duration": 0.017717, - "end_time": "2026-01-01T05:23:25.933124", + "duration": 0.024564, + "end_time": "2026-08-01T07:24:33.107366", "exception": false, - "start_time": "2026-01-01T05:23:25.915407", + "start_time": "2026-08-01T07:24:33.082802", "status": "completed" }, "tags": [] @@ -384,14 +400,14 @@ " \n", " \n", " 0\n", - " 41280080\n", - " PMC12632981\n", - " 10.1101/2025.10.15.682705\n", - " Hippocampal grey matter changes across scales ...\n", - " [Karat BG, Farahani MV, Davidson M, Thurairaja...\n", - " 2025\n", + " 42465432\n", + " PMC13370454\n", + " 10.1101/2024.09.05.610266\n", + " Mapping the topographic organization of the hu...\n", + " [Haast RA, Kai J, Taha A, Liu V, Kasa LW, Gilm...\n", + " 2026\n", + " 7\n", " 10\n", - " 15\n", " bioRxiv\n", " \n", " \n", @@ -399,39 +415,115 @@ " \n", " \n", " 1\n", - " 41034610\n", - " PMC12510884\n", - " 10.1038/s41592-025-02783-3\n", - " HippoMaps: multiscale cartography of human hip...\n", - " [DeKraker J, Cabalo DG, Royer J, Ngo A, Khan A...\n", - " 2025\n", - " 10\n", + " 42456416\n", + " \n", + " 10.1016/j.yebeh.2026.111189\n", + " Characterizing functional connectivity alterat...\n", + " [Moscol G, Castrilli B, Bucha Jain P, Mofrad M...\n", + " 2026\n", + " 7\n", + " 15\n", + " Epilepsy Behav\n", + " 184\n", + " \n", + " 111189\n", + " \n", + " \n", + " 2\n", + " 42442923\n", + " PMC13364513\n", + " 10.1002/nbm.70355\n", + " High-Resolution Diffusion Kurtosis Imaging of ...\n", + " [Stack-Sanchez P, Gross DW, Khan AR, Beaulieu C]\n", + " 2026\n", + " 8\n", " 1\n", - " Nat Methods\n", - " 22\n", - " 10\n", - " 2211-2222\n", + " NMR Biomed\n", + " 39\n", + " 8\n", + " e70355\n", + " \n", + " \n", + " 3\n", + " 42120698\n", + " PMC13167817\n", + " 10.1007/s11682-026-01162-6\n", + " Longitudinal evaluation of hippocampal subfiel...\n", + " [Lerosier B, Segobin S, Allouache D, Noal S, L...\n", + " 2026\n", + " 5\n", + " 13\n", + " Brain Imaging Behav\n", + " 20\n", + " 3\n", + " \n", + " \n", + " \n", + " 4\n", + " 41680562\n", + " PMC13009190\n", + " 10.1038/s42003-026-09622-x\n", + " Microstructural variation of hippocampal subst...\n", + " [Karat BG, Genc S, Raven EP, Palombo M, Khan A...\n", + " 2026\n", + " 2\n", + " 12\n", + " Commun Biol\n", + " 9\n", + " 1\n", + " \n", + " \n", + " \n", + " 5\n", + " 41531669\n", + " PMC12794307\n", + " 10.1162/IMAG.a.1080\n", + " Revisiting the interpretation of axon diameter...\n", + " [Karat BG, Wren-Jarvis J, Raven EP, Khan AR, J...\n", + " 2026\n", + " 8\n", + " 1\n", + " Imaging Neurosci (Camb)\n", + " 4\n", + " \n", + " \n", " \n", " \n", "\n", "" ], "text/plain": [ - " pmid pmcid doi \\\n", - "0 41280080 PMC12632981 10.1101/2025.10.15.682705 \n", - "1 41034610 PMC12510884 10.1038/s41592-025-02783-3 \n", + " pmid pmcid doi \\\n", + "0 42465432 PMC13370454 10.1101/2024.09.05.610266 \n", + "1 42456416 10.1016/j.yebeh.2026.111189 \n", + "2 42442923 PMC13364513 10.1002/nbm.70355 \n", + "3 42120698 PMC13167817 10.1007/s11682-026-01162-6 \n", + "4 41680562 PMC13009190 10.1038/s42003-026-09622-x \n", + "5 41531669 PMC12794307 10.1162/IMAG.a.1080 \n", "\n", " title \\\n", - "0 Hippocampal grey matter changes across scales ... \n", - "1 HippoMaps: multiscale cartography of human hip... \n", + "0 Mapping the topographic organization of the hu... \n", + "1 Characterizing functional connectivity alterat... \n", + "2 High-Resolution Diffusion Kurtosis Imaging of ... \n", + "3 Longitudinal evaluation of hippocampal subfiel... \n", + "4 Microstructural variation of hippocampal subst... \n", + "5 Revisiting the interpretation of axon diameter... \n", "\n", " authors year month day \\\n", - "0 [Karat BG, Farahani MV, Davidson M, Thurairaja... 2025 10 15 \n", - "1 [DeKraker J, Cabalo DG, Royer J, Ngo A, Khan A... 2025 10 1 \n", + "0 [Haast RA, Kai J, Taha A, Liu V, Kasa LW, Gilm... 2026 7 10 \n", + "1 [Moscol G, Castrilli B, Bucha Jain P, Mofrad M... 2026 7 15 \n", + "2 [Stack-Sanchez P, Gross DW, Khan AR, Beaulieu C] 2026 8 1 \n", + "3 [Lerosier B, Segobin S, Allouache D, Noal S, L... 2026 5 13 \n", + "4 [Karat BG, Genc S, Raven EP, Palombo M, Khan A... 2026 2 12 \n", + "5 [Karat BG, Wren-Jarvis J, Raven EP, Khan AR, J... 2026 8 1 \n", "\n", - " journal volume issue pages \n", - "0 bioRxiv \n", - "1 Nat Methods 22 10 2211-2222 " + " journal volume issue pages \n", + "0 bioRxiv \n", + "1 Epilepsy Behav 184 111189 \n", + "2 NMR Biomed 39 8 e70355 \n", + "3 Brain Imaging Behav 20 3 \n", + "4 Commun Biol 9 1 \n", + "5 Imaging Neurosci (Camb) 4 " ] }, "execution_count": 6, @@ -462,18 +554,18 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.19" + "version": "3.10.20" }, "papermill": { "default_parameters": {}, - 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