SetUp/get_python_ggplot_working at master · TomSmithCGAT/SetUp · GitHub

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>>> import ggplot
print(/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/components/smoothers.py:4: FutureWarning: The pandas.lib module is deprecated and will be removed in a future version. These are private functions and can be accessed from pandas._libs.lib instead
  from pandas.lib import Timestamp
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/__init__.py", line 21, in <module>
    from .qplot import qplot
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/qplot.py", line 6, in <module>
    from .geoms import geom_point, geom_bar, geom_boxplot, geom_histogram, geom_line
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/geoms/__init__.py", line 4, in <module>
    from .geom_abline import geom_abline
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/geoms/geom_abline.py", line 6, in <module>
    from .geom import geom
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/geoms/geom.py", line 10, in <module>
    import ggplot.stats
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/stats/__init__.py", line 11, in <module>
    from .stat_smooth import stat_smooth
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/stats/stat_smooth.py", line 6, in <module>
    from ggplot.components import smoothers
  File "/home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/components/smoothers.py", line 4, in <module>
    from pandas.lib import Timestamp
ImportError: cannot import name 'Timestamp'
>>> exit()

Based on:
https://stackoverflow.com/questions/50591982/importerror-cannot-import-name-timestamp

> cd /home/PROT-FILESVR1/proteomics/tss38/cgat-install/conda-install/envs/cgat-devel-proloc/lib/python3.6/site-packages/ggplot/
> sed -i 's/pandas.lib/pandas/g' components/smoothers.py
> python
Python 3.6.6 | packaged by conda-forge | (default, Oct 12 2018, 14:08:43)
[GCC 4.8.2 20140120 (Red Hat 4.8.2-15)] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import ggplot
>>> exit()