From 3368dd6cb1e66a8618d0c2dcd55712f0d9d5e9f5 Mon Sep 17 00:00:00 2001 From: YuzhouChang Date: Thu, 30 Jul 2026 20:56:50 -0400 Subject: [PATCH] Revise demo table in CosMx data standar Updated the demo table in the data standard document to include necessary columns and their descriptions. --- CosMx/00_data_standard/CosMx_data_standard.md | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/CosMx/00_data_standard/CosMx_data_standard.md b/CosMx/00_data_standard/CosMx_data_standard.md index 9362c33..c59b7d6 100644 --- a/CosMx/00_data_standard/CosMx_data_standard.md +++ b/CosMx/00_data_standard/CosMx_data_standard.md @@ -72,8 +72,18 @@ The meta data should contain at least the following information: ### DEMO -![DEMO](figure/demo_metadata.png) -\# Columns with pink background are necessary. +| TMA | FOV | core | tissue_type | region | patient_ID | treatment | response | +|---:|---:|---:|---|---|---|---|---| +| 542 | 1 | 1 | LN | | LN2 | | | +| 542 | 2 | 2 | RCC | Center | RCC25 | Cabo-Nivo | PD | +| 542 | 3 | 2 | RCC | Center | RCC25 | Cabo-Nivo | PD | +| 542 | 4 | 3 | RCC | Center | RCC25 | Cabo-Nivo | PD | +| 542 | 5 | 3 | RCC | Center | RCC25 | Cabo-Nivo | PD | +| 542 | 6 | 4 | RCC | Center | RCC25 | Cabo-Nivo | PD | +| 542 | 7 | 4 | RCC | Center | RCC25 | Cabo-Nivo | PD | +| 542 | 8 | 5 | Tonsil | | TON4 | | | +| 542 | 9 | 6 | RCC | Center | RCC24 | Cabo-Nivo | PD | +| 542 | 10 | 6 | RCC | Center | RCC24 | Cabo-Nivo | PD |\# Columns with pink background are necessary. ### File structure