From 55addc469807bf79ea0b2e43bc0d3b2455755a2c Mon Sep 17 00:00:00 2001 From: A Wokaty Date: Tue, 28 Apr 2026 09:05:32 -0400 Subject: [PATCH 1/3] bump x.y.z version to even y prior to creation of RELEASE_3_23 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 17cce5f..9ef2f0b 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: markeR Title: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers -Version: 1.1.2 +Version: 1.2.0 Authors@R: c( person("Rita", "Martins-Silva", From ec844f3429bbab9ed6ea5885b1816ce71f1199a5 Mon Sep 17 00:00:00 2001 From: A Wokaty Date: Tue, 28 Apr 2026 09:05:32 -0400 Subject: [PATCH 2/3] bump x.y.z version to odd y following creation of RELEASE_3_23 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 9ef2f0b..d8f41ca 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: markeR Title: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers -Version: 1.2.0 +Version: 1.3.0 Authors@R: c( person("Rita", "Martins-Silva", From d319036a97b34cb168c5d73b0e71fc7c58b8d2f1 Mon Sep 17 00:00:00 2001 From: Rita Silva Date: Fri, 8 May 2026 15:24:52 +0100 Subject: [PATCH 3/3] bioc > v1.2 --- DESCRIPTION | 2 +- README.Rmd | 2 +- README.md | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 17cce5f..aab1bbb 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: markeR Title: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers -Version: 1.1.2 +Version: 1.2 Authors@R: c( person("Rita", "Martins-Silva", diff --git a/README.Rmd b/README.Rmd index 94f25d9..4bfc4ca 100644 --- a/README.Rmd +++ b/README.Rmd @@ -30,7 +30,7 @@ knitr::opts_chunk$set( > **To cite `markeR` please use:** > -> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.1.2, https://bioconductor.org/packages/markeR. +> Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). _markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers_. doi:10.18129/B9.bioc.markeR, R package version 1.2, https://bioconductor.org/packages/markeR. The folder `inst/Paper/` is in the **paper** branch and contains all scripts and materials used in the original `markeR` paper to reproduce analyses and figures. You can browse it [here](https://github.com/DiseaseTranscriptomicsLab/markeR/tree/paper/inst/Paper). diff --git a/README.md b/README.md index 0daabf8..521decb 100644 --- a/README.md +++ b/README.md @@ -26,7 +26,7 @@ across experimental and clinical phenotypes. > > Martins-Silva R, Kaizeler A, Barbosa-Morais NL (2025). *markeR: An R > Toolkit for Evaluating Gene Signatures as Phenotypic Markers*. -> , R package version 1.1.2, +> , R package version 1.2, > . The folder `inst/Paper/` is in the **paper** branch and contains all