diff --git a/docs/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.html b/docs/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.html index f4faa638..b6e306f0 100644 --- a/docs/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.html +++ b/docs/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.html @@ -409,6 +409,7 @@

ORNL Clostridium-Desulfovibrio-Geobacter Trophic Model Community

+ @@ -690,6 +691,19 @@

Cellobiose Fermentation Supports Partner Growth

+
+ Downstream Effects: + +
+ Sulfate-Linked Dependence of D. vulgaris +
+ +
+ Fumarate-Linked Dependence of G. sulfurreducens +
+ +
+

Evidence

@@ -919,6 +933,45 @@

Evidence

+
+

Knowledge gaps & discussions (1)

+ +
+

+ KNOWLEDGE_GAP + OPEN + Which exact C. cellulolyticum fermentation products are transferred to D. vulgaris and G. sulfurreducens, and is the electron-acceptor to cross-feeding coupling perturbation-demonstrated rather than only abstract-level implied? + +

+

The curated donor-to-partner causal edges rest on the abstract statement that the partners "derived carbon and energy from the metabolic products" of C. cellulolyticum; the primary full text (doi:10.1186/1471-2180-10-149) was not retrievable, so the exact exchanged metabolites and any sulfate/fumarate-removal or inhibitor perturbation evidence remain unresolved. Products reported for a related two-species C. cellulolyticum / G. sulfurreducens fuel-cell system (acetate, ethanol, H2) must NOT be imported here without exact-system verification. +

+ +

Attaches to: ecological_interactions#Sulfate-Linked Dependence of D. vulgaris, ecological_interactions#Fumarate-Linked Dependence of G. sulfurreducens

+ + + +
+ 1 evidence item(s) + +
+
+ IN_VITRO + PARTIAL + + + doi:10.1186/1471-2180-10-149 + +
+

D. vulgaris and G. sulfurreducens derived carbon and energy from the metabolic products

+

The cross-feeding is stated only at the level of "metabolic products" without naming the exact exchanged compounds — the basis for filing this as a knowledge gap.

+
+ +
+ + +
+ +
diff --git a/kb/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.yaml b/kb/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.yaml index 793e07fe..6f2d4ef9 100644 --- a/kb/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.yaml +++ b/kb/communities/ORNL_Clostridium_Desulfovibrio_Geobacter_Trophic_Model.yaml @@ -166,6 +166,20 @@ ecological_interactions: term: id: GO:0006113 label: fermentation + downstream: + - target: Sulfate-Linked Dependence of D. vulgaris + description: > + C. cellulolyticum cellobiose-fermentation products are the carbon/energy + (electron-donor) source D. vulgaris consumes while reducing its supplied + sulfate acceptor; the fermentation cross-feeding is required for + D. vulgaris's sulfate-linked growth. (Abstract-level / directly implied, + not perturbation-demonstrated.) + - target: Fumarate-Linked Dependence of G. sulfurreducens + description: > + The same fermentation products support G. sulfurreducens, which reduces + its supplied fumarate acceptor; the cross-feeding is required for its + fumarate-linked growth. (Abstract-level / directly implied, not + perturbation-demonstrated.) evidence: - reference: doi:10.1186/1471-2180-10-149 supports: SUPPORT @@ -404,3 +418,31 @@ metal_relevance: NOT_APPLICABLE metal_notes: > No metal or rare earth amendments or direct metal-reduction measurements are curated for this abstract-supported record. +discussions: +- discussion_id: kg-ornl-exchanged-products-and-edge-strength + prompt: > + Which exact C. cellulolyticum fermentation products are transferred to + D. vulgaris and G. sulfurreducens, and is the electron-acceptor to + cross-feeding coupling perturbation-demonstrated rather than only + abstract-level implied? + kind: KNOWLEDGE_GAP + status: OPEN + attaches_to: + - ecological_interactions#Sulfate-Linked Dependence of D. vulgaris + - ecological_interactions#Fumarate-Linked Dependence of G. sulfurreducens + rationale: > + The curated donor-to-partner causal edges rest on the abstract statement that + the partners "derived carbon and energy from the metabolic products" of + C. cellulolyticum; the primary full text (doi:10.1186/1471-2180-10-149) was not + retrievable, so the exact exchanged metabolites and any sulfate/fumarate-removal + or inhibitor perturbation evidence remain unresolved. Products reported for a + related two-species C. cellulolyticum / G. sulfurreducens fuel-cell system + (acetate, ethanol, H2) must NOT be imported here without exact-system + verification. + evidence: + - reference: doi:10.1186/1471-2180-10-149 + supports: PARTIAL + evidence_source: IN_VITRO + snippet: D. vulgaris and G. sulfurreducens derived carbon and energy from the metabolic products + explanation: The cross-feeding is stated only at the level of "metabolic products" without + naming the exact exchanged compounds — the basis for filing this as a knowledge gap.