From 2e47532d3a59ce1d8423f0c8b134536ef82754f7 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 24 Jul 2026 02:19:03 +0000 Subject: [PATCH 1/2] Bump gitpython from 3.1.50 to 3.1.52 Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.50 to 3.1.52. - [Release notes](https://github.com/gitpython-developers/GitPython/releases) - [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES) - [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.50...3.1.52) --- updated-dependencies: - dependency-name: gitpython dependency-version: 3.1.52 dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 15 ++++++--------- 1 file changed, 6 insertions(+), 9 deletions(-) diff --git a/poetry.lock b/poetry.lock index b8a2e0f..a0d820c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1248,10 +1248,9 @@ tqdm = ["tqdm"] name = "gitdb" version = "4.0.12" description = "Git Object Database" -optional = true +optional = false python-versions = ">=3.7" groups = ["main"] -markers = "extra == \"nextflow\"" files = [ {file = "gitdb-4.0.12-py3-none-any.whl", hash = "sha256:67073e15955400952c6565cc3e707c554a4eea2e428946f7a4c162fab9bd9bcf"}, {file = "gitdb-4.0.12.tar.gz", hash = "sha256:5ef71f855d191a3326fcfbc0d5da835f26b13fbcba60c32c21091c349ffdb571"}, @@ -1262,15 +1261,14 @@ smmap = ">=3.0.1,<6" [[package]] name = "gitpython" -version = "3.1.50" +version = "3.1.52" description = "GitPython is a Python library used to interact with Git repositories" -optional = true +optional = false python-versions = ">=3.7" groups = ["main"] -markers = "extra == \"nextflow\"" files = [ - {file = "gitpython-3.1.50-py3-none-any.whl", hash = "sha256:d352abe2908d07355014abdd21ddf798c2a961469239afec4962e9da884858f9"}, - {file = "gitpython-3.1.50.tar.gz", hash = "sha256:80da2d12504d52e1f998772dc5baf6e553f8d2fcfe1fcc226c9d9a2ee3372dcc"}, + {file = "gitpython-3.1.52-py3-none-any.whl", hash = "sha256:79a36ee1f83523214a3f72d56cf1c4e490d577dc61af77e43dfe5862bd9da01a"}, + {file = "gitpython-3.1.52.tar.gz", hash = "sha256:de0a8ad86274c6e75ae8b37dd055ba68f19818c813108642263227b20775b48e"}, ] [package.dependencies] @@ -3879,10 +3877,9 @@ files = [ name = "smmap" version = "5.0.3" description = "A pure Python implementation of a sliding window memory map manager" -optional = true +optional = false python-versions = ">=3.7" groups = ["main"] -markers = "extra == \"nextflow\"" files = [ {file = "smmap-5.0.3-py3-none-any.whl", hash = "sha256:c106e05d5a61449cf6ba9a1e650227ecfb141590d2a98412103ff35d89fc7b2f"}, {file = "smmap-5.0.3.tar.gz", hash = "sha256:4d9debb8b99007ae47165abc08670bd74cb74b5227dda7f643eccc4e9eb5642c"}, From e7815eb954d493823eb5c1d486c1dbb2eb601f16 Mon Sep 17 00:00:00 2001 From: Nathan Thorpe Date: Thu, 23 Jul 2026 19:24:11 -0700 Subject: [PATCH 2/2] Make gitdb, gitpython, and smmap packages optional Updated packages to be optional and added markers for 'nextflow'. --- poetry.lock | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/poetry.lock b/poetry.lock index a0d820c..b7305a1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1248,9 +1248,10 @@ tqdm = ["tqdm"] name = "gitdb" version = "4.0.12" description = "Git Object Database" -optional = false +optional = true python-versions = ">=3.7" groups = ["main"] +markers = "extra == \"nextflow\"" files = [ {file = "gitdb-4.0.12-py3-none-any.whl", hash = "sha256:67073e15955400952c6565cc3e707c554a4eea2e428946f7a4c162fab9bd9bcf"}, {file = "gitdb-4.0.12.tar.gz", hash = "sha256:5ef71f855d191a3326fcfbc0d5da835f26b13fbcba60c32c21091c349ffdb571"}, @@ -1263,9 +1264,10 @@ smmap = ">=3.0.1,<6" name = "gitpython" version = "3.1.52" description = "GitPython is a Python library used to interact with Git repositories" -optional = false +optional = true python-versions = ">=3.7" groups = ["main"] +markers = "extra == \"nextflow\"" files = [ {file = "gitpython-3.1.52-py3-none-any.whl", hash = "sha256:79a36ee1f83523214a3f72d56cf1c4e490d577dc61af77e43dfe5862bd9da01a"}, {file = "gitpython-3.1.52.tar.gz", hash = "sha256:de0a8ad86274c6e75ae8b37dd055ba68f19818c813108642263227b20775b48e"}, @@ -3877,9 +3879,10 @@ files = [ name = "smmap" version = "5.0.3" description = "A pure Python implementation of a sliding window memory map manager" -optional = false +optional = true python-versions = ">=3.7" groups = ["main"] +markers = "extra == \"nextflow\"" files = [ {file = "smmap-5.0.3-py3-none-any.whl", hash = "sha256:c106e05d5a61449cf6ba9a1e650227ecfb141590d2a98412103ff35d89fc7b2f"}, {file = "smmap-5.0.3.tar.gz", hash = "sha256:4d9debb8b99007ae47165abc08670bd74cb74b5227dda7f643eccc4e9eb5642c"},