From da281ed3d7db8dd2e05a7e4624b95d9daa257e34 Mon Sep 17 00:00:00 2001 From: jinxu9 Date: Fri, 10 Apr 2020 16:57:49 +0800 Subject: [PATCH] fix error " int to str " when using pm.core --- src/scATACseq_mtSMC_3.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/scATACseq_mtSMC_3.py b/src/scATACseq_mtSMC_3.py index 70fa94f..1d14368 100755 --- a/src/scATACseq_mtSMC_3.py +++ b/src/scATACseq_mtSMC_3.py @@ -302,7 +302,7 @@ #cmd += " -known " + Indel_vcf_s + " " cmd += " -known " + res.MTIndel + " " cmd += " -known " + res.GIndel + " " -cmd += " -nt " + pm.cores + " " +cmd += " -nt " + str(pm.cores) + " " cmd += " -I " + rmdup_bam + " " cmd += " -o " + target_interval pm.run(cmd,target_interval) @@ -316,7 +316,7 @@ #cmd += " -known " + Indel_vcf_a + " " cmd += " -known " + res.GIndel + " " cmd += " -known " + res.MTIndel + " " -#cmd += " -nt " + pm.cores + " " +#cmd += " -nt " + str(pm.cores) + " " cmd += " -I " + rmdup_bam + " " cmd += " -targetIntervals " + target_interval cmd += " -o " + realigned_bam